ICEberg
ICEberg contains data from 694 references related to integrative and conjugative elements (ICEs), integrative and mobilizable elements (IMEs), cis-mobilizable element (CIMEs). Last Update: May 02, 2018

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reviews in silico analyses experimental studies genome sequencing all
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Number of references found for the 'in silico analyses' category : 84

References
(1) Delahay RM et al (2018). Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements. Mob DNA. 9:05. [PudMed:29416569]
(2) Botelho J et al (2018). Two decades of blaVIM-2-producing Pseudomonas aeruginosa dissemination: an interplay between mobile genetic elements and successful clones. J Antimicrob Chemother. 73(4):873-882. [PudMed:29373674]
(3) Pham NP et al (2017). Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat. BMC Genomics. 18(1):955. [PudMed:29216827]
(4) Husain F et al (2017). Novel large-scale chromosomal transfer in Bacteroides fragilis contributes to its pan-genome and rapid environmental adaptation. Microb Genom. 3(11). [PudMed:29208130]
(5) Alamos P et al (2017). Functionality of tRNAs encoded in a mobile genetic element from an acidophilic bacterium. RNA Biol. :1-10. [PudMed:28708455]
(6) Bie L et al (2017). Identification and characterization of new members of the SXT/R391 family of integrative and conjugative elements (ICEs) in Proteus mirabilis. Int J Antimicrob Agents. 50(2):242-246. [PudMed:28602701]
(7) Dahmane N et al (2017). Diversity of Integrative and Conjugative Elements of Streptococcus salivarius and Their Intra- and Interspecies Transfer. Appl Environ Microbiol. 83(13). [PudMed:28432093]
(8) Kambarev S et al (2017). Draft Genome Sequences of Two Highly Erythromycin-Resistant Streptococcus gallolyticus subsp. gallolyticus Isolates Containing a Novel Tn916-Like Element, Tn6331. Genome Announc. 5(16). [PudMed:28428309]
(9) Bosse JT et al (2017). Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae. Front Microbiol. 0.549305556. [PudMed:28321207]
(10) Lopez-Perez M et al (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PudMed:28056800]
(11) Zhang Y et al (2017). Emergence of Novel Pathogenic Streptomyces Species by Site-Specific Accretion and cis-Mobilization of Pathogenicity Islands. Mol Plant Microbe Interact. 30(1):72-82. [PudMed:27977935]
(12) Badhai J et al (2016). Characterization of Three Novel SXT/R391 Integrating Conjugative Elements ICEMfuInd1a and ICEMfuInd1b, and ICEMprChn1 Identified in the Genomes of Marinomonas fungiae JCM 18476(T) and Marinomonas profundimaris Strain D104. Front Microbiol. 1.608333333. [PudMed:27933056]
(13) Li X et al (2016). SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance. Sci Rep. 6:37372. [PudMed:27892525]
(14) Ling J et al (2016). Plant nodulation inducers enhance horizontal gene transfer of Azorhizobium caulinodans symbiosis island. Proc Natl Acad Sci U S A. 113(48):13875-13880. [PudMed:27849579]
(15) Rahman M et al (2016). Comparative Genome Analysis of the Daptomycin-Resistant Streptococcus anginosus Strain J4206 Associated with Breakthrough Bacteremia. Genome Biol Evol. 8(11):3446-3459. [PudMed:27678123]
(16) Campisi E et al (2016). Genomic Analysis Reveals Multi-Drug Resistance Clusters in Group B Streptococcus CC17 Hypervirulent Isolates Causing Neonatal Invasive Disease in Southern Mainland China. Front Microbiol. 1.170138889. [PudMed:27574519]
(17) Uchiyama I et al (2016). A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands. PLoS One. 11(8):e0159419. [PudMed:27504980]
(18) Bosse JT et al (2016). ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae. Front Microbiol. 0.854166667. [PudMed:27379024]
(19) Del Grosso M et al (2016). ICESpy009, a Conjugative Genetic Element Carrying mef(E) in Streptococcus pyogenes. Antimicrob Agents Chemother. 60(7):3906-12. [PudMed:27067338]
(20) Wang R et al (2016). Variations in SXT elements in epidemic Vibrio cholerae O1 El Tor strains in China. Sci Rep. 6:22733. [PudMed:26956038]
(21) Athey TB et al (2016). Population Structure and Antimicrobial Resistance Profiles of Streptococcus suis Serotype 2 Sequence Type 25 Strains. PLoS One. 11(3):e0150908. [PudMed:26954687]
(22) Lei CW et al (2016). Characterization of SXT/R391 Integrative and Conjugative Elements in Proteus mirabilis Isolates from Food-Producing Animals in China. Antimicrob Agents Chemother. 60(3):1935-8. [PudMed:26824957]
(23) Naito M et al (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327]
(24) Bidet P et al (2016). Genome Analysis of Kingella kingae Strain KWG1 Reveals How a beta-Lactamase Gene Inserted in the Chromosome of This Species. Antimicrob Agents Chemother. 60(1):703-8. [PudMed:26574009]
(25) Chapleau M et al (2016). Identification of genetic and environmental factors stimulating excision from Streptomyces scabiei chromosome of the toxicogenic region responsible for pathogenicity. Mol Plant Pathol. 17(4):501-9. [PudMed:26177341]
(26) Ambroset C et al (2015). New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration. Front Microbiol. 1.279861111. [PudMed:26779141]
(27) Cesbron S et al (2015). Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation. Front Plant Sci. 1.031944444. [PudMed:26734033]
(28) Mohammed M et al (2015). Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak. BMC Res Notes. 0.838888889. [PudMed:26613761]
(29) Kojima KK et al (2015). Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance. BMC Genomics. 1.234027778. [PudMed:26481899]
(30) Douarre PE et al (2015). Host specificity in the diversity and transfer of lsa resistance genes in group B Streptococcus. J Antimicrob Chemother. 70(12):3205-13. [PudMed:26410170]
(31) Morales M et al (2015). Insights into the Evolutionary Relationships of LytA Autolysin and Ply Pneumolysin-Like Genes in Streptococcus pneumoniae and Related Streptococci. Genome Biol Evol. 7(9):2747-61. [PudMed:26349755]
(32) Han X et al (2015). Functional analysis of a bacitracin resistance determinant located on ICECp1, a novel Tn916-like element from a conjugative plasmid in Clostridium perfringens. Antimicrob Agents Chemother. 59(11):6855-65. [PudMed:26282424]
(33) Chen J et al (2015). Characterization of the chromosomal integration of Saccharopolyspora plasmid pCM32 and its application to improve production of spinosyn in Saccharopolyspora spinosa. Appl Microbiol Biotechnol. 99(23):10141-9. [PudMed:26260388]
(34) Martin-Moldes Z et al (2015). Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features. Syst Appl Microbiol. 38(7):462-71. [PudMed:26259823]
(35) de Andrade Barboza S et al (2015). Complete Genome Sequence of Noninvasive Streptococcus pyogenes M/emm28 Strain STAB10015, Isolated from a Child with Perianal Dermatitis in French Brittany. Genome Announc. 3(4). [PudMed:26184948]
(36) De Maayer P et al (2015). Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis. Front Microbiol. 0.65. [PudMed:26106378]
(37) Fonseca EL et al (2015). Full characterization of the integrative and conjugative element carrying the metallo-beta-lactamase bla SPM-1 and bicyclomycin bcr1 resistance genes found in the pandemic Pseudomonas aeruginosa clone SP/ST277. J Antimicrob Chemother. 70(9):2547-50. [PudMed:26093374]
(38) Carraro N et al (2015). Replication and Active Partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 Family: The Line between ICEs and Conjugative Plasmids Is Getting Thinner. PLoS Genet. 11(6):e1005298. [PudMed:26061412]
(39) Puymege A et al (2015). Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the tRNA(Lys CTT) gene. Mol Genet Genomics. 290(5):1727-40. [PudMed:25832353]
(40) Chancey ST et al (2015). Composite mobile genetic elements disseminating macrolide resistance in Streptococcus pneumoniae. Front Microbiol. 6:26. [PudMed:25709602]
(41) Hu Y et al (2015). Genomic insights into intrinsic and acquired drug resistance mechanisms in Achromobacter xylosoxidans. Antimicrob Agents Chemother. 59(2):1152-61. [PudMed:25487802]
(42) Davies MR et al (2015). Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance. Nat Genet. 47(1):84-7. [PudMed:25401300]
(43) Miyazaki R et al (2015). Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds. Environ Microbiol. 17(1):91-104. [PudMed:24803113]
(44) Hilty M et al (2014). Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages. Genome Biol Evol. 6(12):3281-94. [PudMed:25480686]
(45) Bustamante P et al (2014). Toxin-antitoxin systems in the mobile genome of Acidithiobacillus ferrooxidans. PLoS One. 9(11):e112226. [PudMed:25384039]
(46) Raftis EJ et al (2014). Unusual genome complexity in Lactobacillus salivarius JCM1046. BMC Genomics. 1.160416667. [PudMed:25201645]
(47) Husain F et al (2014). The Ellis Island Effect: A novel mobile element in a multi-drug resistant Bacteroides fragilis clinical isolate includes a mosaic of resistance genes from Gram-positive bacteria. Mob Genet Elements. 4:e29801. [PudMed:25165618]
(48) Spagnoletti M et al (2014). Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage. MBio. 5(4). [PudMed:25139901]
(49) Mingoia M et al (2014). Tn5253 family integrative and conjugative elements carrying mef(I) and catQ determinants in Streptococcus pneumoniae and Streptococcus pyogenes. Antimicrob Agents Chemother. 58(10):5886-93. [PudMed:25070090]
(50) Montilla A et al (2014). Genetic environment of the lnu(B) gene in a Streptococcus agalactiae clinical isolate. Antimicrob Agents Chemother. 58(9):5636-7. [PudMed:24957835]
(51) Huguet-Tapia JC et al (2014). Characterization of the integration and modular excision of the integrative conjugative element PAISt in Streptomyces turgidiscabies Car8. PLoS One. 9(6):e99345. [PudMed:24927117]
(52) Clewell DB et al (2014). A comprehensive analysis of Helicobacter pylori plasticity zones reveals that they are integrating conjugative elements with intermediate integration specificity. BMC Genomics. 0.840277778. [PudMed:24767410]
(53) Guerillot R et al (2014). The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries. Genome Biol Evol. 6(2):260-72. [PudMed:24418649]
(54) Reeve W et al (2013). Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). Stand Genomic Sci. 9(2):294-303. [PudMed:24976886]
(55) Wee BA et al (2013). A distinct and divergent lineage of genomic island-associated Type IV Secretion Systems in Legionella. PLoS One. 8(12):e82221. [PudMed:24358157]
(56) Olson AB et al (2013). Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation. BMC Genomics. 1.204861111. [PudMed:24341328]
(57) Acuna LG et al (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PudMed:24250794]
(58) Wyres KL et al (2013). Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974. BMC Genomics. 0.930555556. [PudMed:23879707]
(59) Tirumalai MR et al (2013). An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores. Extremophiles. 17(5):767-74. [PudMed:23812891]
(60) Rao C et al (2013). Phylogenetic reconstruction of the Legionella pneumophila Philadelphia-1 laboratory strains through comparative genomics. PLoS One. 8(5):e64129. [PudMed:23717549]
(61) Butler MI et al (2013). Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One. 8(2):e57464. [PudMed:23555547]
(62) Guerillot R et al (2013). Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. J Bacteriol. 195(9):1979-90. [PudMed:23435978]
(63) Lautner M et al (2013). Regulation, integrase-dependent excision, and horizontal transfer of genomic islands in Legionella pneumophila. J Bacteriol. 195(7):1583-97. [PudMed:23354744]
(64) Daccord A et al (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461]
(65) Moreno Switt AI et al (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PudMed:22911766]
(66) Taviani E et al (2012). Genomic analysis of ICEVchBan8: An atypical genetic element in Vibrio cholerae. FEBS Lett. 586(11):1617-21. [PudMed:22673571]
(67) Mann RA et al (2012). Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene. 504(1):6-12. [PudMed:22579880]
(68) Bian F et al (2012). Genome sequences of six Pseudoalteromonas strains isolated from Arctic sea ice. J Bacteriol. 194(4):908-9. [PudMed:22275105]
(69) Seth-Smith HM et al (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511]
(70) Shepard SM et al (2012). Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. J Bacteriol. 194(2):395-405. [PudMed:22081385]
(71) Ghinet MG et al (2011). Uncovering the prevalence and diversity of integrating conjugative elements in actinobacteria. PLoS One. 6(11):e27846. [PudMed:22114709]
(72) Guglielmini J et al (2011). The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet. 7(8):e1002222. [PudMed:21876676]
(73) Wozniak RA et al (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216]
(74) Ryan MP et al (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653]
(75) Putze J et al (2009). Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae. Infect Immun. 77(11):4696-703. [PudMed:19720753]
(76) Han X et al (2009). Identification of a novel variant of staphylococcal cassette chromosome mec, type II.5, and Its truncated form by insertion of putative conjugative transposon Tn6012. Antimicrob Agents Chemother. 53(6):2616-9. [PudMed:19364875]
(77) Brochet M et al (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498]
(78) te Poele EM et al (2008). Actinomycete integrative and conjugative pMEA-like elements of Amycolatopsis and Saccharopolyspora decoded. Plasmid. 59(3):202-16. [PudMed:18295883]
(79) Glockner G et al (2008). Identification and characterization of a new conjugation/type IVA secretion system (trb/tra) of Legionella pneumophila Corby localized on two mobile genomic islands. Int J Med Microbiol. 298(5-6):411-28. [PudMed:17888731]
(80) Juhas M et al (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PudMed:17996041]
(81) Xu J et al (2007). Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol. 5(7):e156. [PudMed:17579514]
(82) Chain PS et al (2006). Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci U S A. 103(42):15280-7. [PudMed:17030797]
(83) Burrus V et al (2002). The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. Plasmid. 48(2):77-97. [PudMed:12383726]
(84) Hansen-Wester I et al (2002). Genome-based identification of chromosomal regions specific for Salmonella spp. Infect Immun. 70(5):2351-60. [PudMed:11953370]