ICEberg
I. Information of ICE
ICEberg ID971
Name ICEHptfs3 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismHelicobacter pylori PeCan18
Size (bp)49362
GC content [Genome] (%)33.79
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_017742 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1015120..1064481 
Putative oriT region -
Putative relaxase coordinates: 1016060..1016692; Locus tag: HPPC18_RS08180;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICEHptfs3 is not available.



The graph information of ICEHptfs3 components from NC_017742
Complete gene list of ICEHptfs3 from NC_017742
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1HPPC18_RS047601010740..1011894 [+], 1155cell division protein FtsZ
2HPPC18_RS047701013811..1014635 [-], 825mechanosensitive ion channel family protein
3HPPC18_RS047751014777..1014971 [-], 195hypothetical protein
4HPPC18_RS081801016060..1016692 [+], 633relaxaseRelaxase, MOBP Family
5HPPC18_RS047851016730..1017881 [-], 1152transposase
6HPPC18_RS047901017850..1018317 [-], 468IS200/IS605-like element ISHp608 family transposase
7HPPC18_RS047951019642..1020709 [+], 1068integraseIntegrase 
8HPPC18_RS048001021026..1021829 [-], 804hypothetical protein
9HPPC18_RS048051021801..1022052 [-], 252hypothetical protein
10HPPC18_RS048101022184..1022864 [-], 681hypothetical protein
11HPPC18_RS048151023086..1023736 [+], 651hypothetical protein
12HPPC18_RS048201023740..1024993 [-], 1254hypothetical protein
13HPPC18_RS048251025005..1026261 [-], 1257type VI secretion protein
14HPPC18_RS048301026261..1027694 [-], 1434hypothetical protein
15HPPC18_RS048351027704..1029677 [-], 1974hypothetical protein
16HPPC18_RS048401029677..1030729 [-], 1053DUF1738 domain-containing protein
17HPPC18_RS081851030888..1031082 [+], 195hypothetical protein
18HPPC18_RS048451031532..1032200 [+], 669ParA family protein
19HPPC18_RS048501032247..1032624 [+], 378hypothetical protein
20HPPC18_RS048551032602..1033267 [+], 666hypothetical protein
21HPPC18_RS048601033341..1034144 [-], 804nucleotidyl transferase AbiEii/AbiGii toxin family protein
22HPPC18_RS048651034114..1034599 [-], 486hypothetical protein
23HPPC18_RS048701034639..1036699 [-], 2061type IA DNA topoisomerase
24HPPC18_RS048751036712..1037032 [-], 321hypothetical protein
25HPPC18_RS048851037413..1037622 [-], 210hypothetical protein
26HPPC18_RS048901037743..1046382 [-], 8640helicase
27HPPC18_RS048951046402..1048645 [-], 2244hypothetical proteinVirD4, T4SS component 
28HPPC18_RS049001048642..1049160 [-], 519hypothetical protein
29HPPC18_RS049051049157..1050101 [-], 945conjugal transfer protein TrbBVirB11, T4SS component 
30HPPC18_RS049101050106..1050381 [-], 276hypothetical protein
31HPPC18_RS049151050398..1051360 [-], 963membrane protein
32HPPC18_RS049201051373..1053613 [-], 2241hypothetical protein
33HPPC18_RS049251053597..1054805 [-], 1209membrane proteinVirB10, T4SS component 
34HPPC18_RS049301054802..1056457 [-], 1656type VI secretion proteinVirB9, T4SS component 
35HPPC18_RS049401057584..1057724 [-], 141hypothetical proteinVirB7, T4SS component 
36HPPC18_RS049451057721..1060297 [-], 2577VirB4 family type IV secretion/conjugal transfer ATPaseVirB4, T4SS component 
37HPPC18_RS049501060297..1060533 [-], 237hypothetical protein
38HPPC18_RS049551060545..1060808 [-], 264hypothetical proteinVirB3, T4SS component 
39HPPC18_RS049601060820..1061104 [-], 285hypothetical proteinVirB2, T4SS component 
40HPPC18_RS049651061227..1062378 [-], 1152transposase
41HPPC18_RS049701062347..1062814 [-], 468IS200/IS605-like element ISHp608 family transposase
42HPPC18_RS049751062967..1063413 [-], 447hypothetical protein
43HPPC18_RS049801063638..1064426 [-], 789hypothetical protein
44HPPC18_RS049951065649..1066332 [+], 684hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins40Fasta
(1) Uchiyama I; Albritton J; Fukuyo M; Kojima KK; Yahara K; Kobayashi I (2016). A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands. PLoS One. 11(8):e0159419. [PudMed:27504980] in_silico
(2) Kojima KK; Kobayashi I (2015). Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance. BMC Genomics. 1.234027778. [PudMed:26481899] in_silico
(3) Clewell DB; Weaver KE; Dunny GM; Coque TM; Francia MV; Hayes F; Fischer W; Breithaupt U; Kern B; Smith SI; Spicher C; Haas R (2014). A comprehensive analysis of Helicobacter pylori plasticity zones reveals that they are integrating conjugative elements with intermediate integration specificity. BMC Genomics. 0.840277778. [PudMed:24767410] in_silico
 
in_silico in silico analysis literature