ICEberg
I. Information of ICE
ICEberg ID956
Name ICEAmaAnS1 This is a predicted ICE derived from literature
FamilySXT/R391
OrganismAlteromonas macleodii D7
Size (bp)117,480
GC content [Genome] (%)47[44.4]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNZ_CP014323 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 1298253..1300403; Locus tag: AVL55_RS05785;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEAmaAnS1 is not available.



The graph information of ICEAmaAnS1 components from NZ_CP014323
Incomplete gene list of ICEAmaAnS1 from NZ_CP014323
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1AVL55_RS202251256716..1256877 [+], 162antirestriction protein family protein
2AVL55_RS055851257198..1258049 [+], 852hypothetical protein
3AVL55_RS055901258042..1258965 [+], 924nucleotidyl transferase AbiEii/AbiGii toxin family protein
4AVL55_RS055951258980..1259183 [-], 204hypothetical protein
5AVL55_RS056001259447..1259635 [-], 189hypothetical protein
6AVL55_RS056051259986..1260306 [+], 321XRE family transcriptional regulator
7AVL55_RS056101260299..1261528 [+], 1230type II toxin-antitoxin system HipA family toxin
8AVL55_RS056151261745..1261939 [+], 195DNA-binding protein
9AVL55_RS056201261951..1263192 [-], 1242DUF4102 domain-containing protein
10AVL55_RS056251263194..1263463 [-], 270hypothetical protein
11AVL55_RS056301263466..1264440 [-], 975rod shape determination protein
12AVL55_RS202301264452..1264658 [+], 207hypothetical protein
13AVL55_RS056351264905..1265351 [+], 447hypothetical protein
14AVL55_RS056401265716..1266684 [+], 969calcium:sodium antiporter
15AVL55_RS056451266753..1267586 [+], 834mechanosensitive ion channel family protein
16AVL55_RS056501267595..1268605 [-], 1011translesion error-prone DNA polymerase V subunit UmuC
17AVL55_RS056551269091..1269528 [-], 438MerR family transcriptional regulator
18AVL55_RS056601269642..1271081 [-], 1440mercury(II) reductase
19AVL55_RS056651271102..1271521 [-], 420mercury transporter MerC
20AVL55_RS056701271521..1271805 [-], 285mercury resistance system periplasmic binding protein MerP
21AVL55_RS056751271852..1272199 [-], 348mercury transporter
22AVL55_RS056801272390..1272761 [-], 372Hg(II)-responsive transcriptional regulator
23AVL55_RS056851273112..1273735 [+], 624serine recombinase
24AVL55_RS056901273858..1274394 [-], 537hypothetical protein
25AVL55_RS056951274398..1276587 [-], 2190hypothetical protein
26AVL55_RS057001276599..1279067 [-], 2469hypothetical protein
27AVL55_RS057051279072..1280481 [-], 1410site-specific integraseIntegrase 
28AVL55_RS057101280634..1280903 [-], 270DNA polymerase
29AVL55_RS057151280911..1281360 [-], 450translesion error-prone DNA polymerase V autoproteolytic subunit
30AVL55_RS057201282000..1282905 [+], 906DNA polymerase III subunit epsilon
31AVL55_RS057251283119..1283418 [+], 300hypothetical protein
32AVL55_RS057301283736..1284704 [+], 969WYL domain-containing protein
33AVL55_RS057351284818..1287247 [+], 2430SAM-dependent DNA methyltransferase
34AVL55_RS057401287247..1288515 [+], 1269restriction endonuclease subunit S
35AVL55_RS057451288525..1289688 [+], 1164DUF4268 domain-containing protein
36AVL55_RS057501289703..1292720 [+], 3018type I restriction endonuclease subunit R
37AVL55_RS057551292743..1293828 [+], 1086ATP-binding region, ATPase-like protein
38AVL55_RS057601293851..1294402 [+], 552MarR family transcriptional regulator
39AVL55_RS057651294707..1295075 [+], 369metal-dependent hydrolase
40AVL55_RS057701295085..1296239 [+], 1155SAVED domain-containing protein
41AVL55_RS057751296232..1297422 [+], 1191nucleotidyltransferase
42AVL55_RS057801297423..1298136 [+], 714hypothetical protein
43AVL55_RS057851298253..1300403 [+], 2151metal-dependent phosphohydrolaseRelaxase, MOBH Family
44AVL55_RS057901300452..1302275 [+], 1824hypothetical proteinTraD_F, T4SS component 
45AVL55_RS057951302285..1302845 [+], 561hypothetical protein
46AVL55_RS058001302832..1303467 [+], 636DUF4400 domain-containing protein
47AVL55_RS058051303494..1304081 [-], 588hypothetical protein
48AVL55_RS058101304700..1305122 [+], 423hypothetical protein
49AVL55_RS058151305176..1305502 [-], 327sel1 repeat family protein
50AVL55_RS058201305545..1305868 [+], 324hypothetical protein
51AVL55_RS058251305962..1307125 [-], 1164hypothetical protein
52AVL55_RS058301307250..1307462 [-], 213hypothetical protein
53AVL55_RS058351307498..1307779 [+], 282type IV conjugative transfer system protein TraLTraL_F, T4SS component 
54AVL55_RS058401307776..1308402 [+], 627hypothetical proteinTraE_F, T4SS component 
55AVL55_RS058451308386..1309282 [+], 897hypothetical proteinTraK_F, T4SS component 
56AVL55_RS058501309285..1310574 [+], 1290conjugal transfer protein TraBTraB_F, T4SS component 
57AVL55_RS058551310571..1311221 [+], 651conjugal transfer protein TraVTraV_F, T4SS component 
58AVL55_RS058601311218..1311607 [+], 390hypothetical proteinTraA_F, T4SS component 
59AVL55_RS058651312016..1314511 [+], 2496copper-translocating P-type ATPase
60AVL55_RS058701314537..1315001 [+], 465Cu(I)-responsive transcriptional regulator
61AVL55_RS058801315684..1315902 [+], 219hypothetical protein
62AVL55_RS058851316587..1317012 [+], 426Cu(I)-responsive transcriptional regulator
63AVL55_RS058901317775..1318128 [+], 354ArsR family transcriptional regulator
64AVL55_RS059001319481..1320509 [+], 1029cation transporter
65AVL55_RS059051320554..1320832 [+], 279transcriptional regulator
66AVL55_RS059101321429..1324083 [+], 2655cadmium-translocating P-type ATPase
67AVL55_RS059201325752..1328943 [+], 3192multidrug efflux RND transporter permease subunit
68AVL55_RS059251328945..1330438 [+], 1494multidrug transporter
69AVL55_RS059301330950..1331261 [+], 312AcrB/AcrD/AcrF family protein
70AVL55_RS059351331414..1331635 [+], 222hydrophobe/amphiphile efflux protein
71AVL55_RS202551331733..1331924 [+], 192copper chaperone
72AVL55_RS202601332625..1332897 [+], 273IS66 family insertion sequence hypothetical protein
73AVL55_RS059501333360..1334052 [+], 693DsbC family proteinTrbB_I, T4SS component 
74AVL55_RS059551334052..1336451 [+], 2400type IV secretion system protein TraCTraC_F, T4SS component 
75AVL55_RS059601336444..1336791 [+], 348hypothetical protein
76AVL55_RS059651336868..1337287 [+], 420conjugal transfer pilin signal peptidase TrbITraF, T4SS component 
77AVL55_RS059701337298..1338422 [+], 1125plasmid pilus assembly proteinTraW_F, T4SS component 
78AVL55_RS059751338406..1339434 [+], 1029TraU family proteinTraU_F, T4SS component 
79AVL55_RS059801339437..1343102 [+], 3666conjugal transfer protein TraNTraN_F, T4SS component 
80AVL55_RS059851343244..1344920 [-], 1677ATP-dependent helicase
81AVL55_RS059901344917..1346842 [-], 1926ATP-dependent endonuclease
82AVL55_RS059951346920..1349298 [-], 2379peptidase S8
83AVL55_RS060001349313..1350284 [-], 972ATP-binding protein
84AVL55_RS060051350395..1350574 [-], 180hypothetical protein
85AVL55_RS060101350716..1351318 [-], 603hypothetical protein
86AVL55_RS060151351686..1352012 [+], 327hypothetical protein
87AVL55_RS060201352028..1352447 [+], 420single-stranded DNA-binding protein
88AVL55_RS060251352527..1353345 [+], 819phage recombination protein Bet
89AVL55_RS060301353632..1354648 [+], 1017DNA recombination protein
90AVL55_RS060351354858..1355817 [+], 960AAA family ATPase
91AVL55_RS060401355817..1356584 [+], 768hypothetical protein
92AVL55_RS060451356683..1357636 [+], 954DUF3150 domain-containing protein
93AVL55_RS060501357698..1358138 [+], 441hypothetical protein
94AVL55_RS060551358208..1359863 [+], 1656VWA domain-containing protein
95AVL55_RS060601359949..1360446 [+], 498DNA repair protein RadC
96AVL55_RS060651360446..1360787 [+], 342hypothetical protein
97AVL55_RS060701360879..1361946 [+], 1068phage P4 alpha, zinc-binding domain-containing protein
98AVL55_RS060751362036..1362743 [+], 708hypothetical protein
99AVL55_RS060801362986..1363927 [-], 942LysR family transcriptional regulator
100AVL55_RS060851364016..1365155 [+], 1140chromate resistance protein
101AVL55_RS060901365527..1366471 [+], 945thioredoxin family proteinTraF_F, T4SS component 
102AVL55_RS060951366474..1367862 [+], 1389TraH family proteinTraH_F, T4SS component 
103AVL55_RS061001367866..1371435 [+], 3570conjugal transfer protein TraGTraG_F, T4SS component 
104AVL55_RS061051371468..1371899 [-], 432hypothetical protein
105AVL55_RS061101371957..1372490 [-], 534transcriptional activator
106AVL55_RS061151372487..1372786 [-], 300transcriptional activator
107AVL55_RS061201372783..1373331 [-], 549lytic transglycosylase domain-containing proteinOrf169_F, T4SS component 
108AVL55_RS061251373318..1373980 [-], 663hypothetical protein
109AVL55_RS061301373967..1374836 [-], 870hypothetical protein
110AVL55_RS061351374892..1375143 [-], 252hypothetical protein
111AVL55_RS061401375261..1375908 [+], 648LexA family transcriptional regulator
112AVL55_RS061451376165..1377754 [+], 1590peptide chain release factor 3
113AVL55_RS061501377788..1379518 [+], 1731arginine--tRNA ligase
114AVL55_RS061551379807..1380373 [+], 567NADPH-dependent oxidoreductase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins103Fasta
(1) Lopez-Perez M; Ramon-Marco N; Rodriguez-Valera F (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PudMed:28056800] in_silico
 
in_silico in silico analysis literature