ICEberg
I. Information of ICE
ICEberg ID950
Name ICEAcaTY.2 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismAcidithiobacillus caldus s ATCC 51756
Size (bp)183,318
GC content [Genome] (%)57.36
Insertion siteAsn-GTT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP005986 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1803307..1980282 
Putative oriT region -
Putative relaxase coordinates: 1817745..1819466; Locus tag: Acaty_c1795;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICEAcaTY.2 is not available.



The graph information of ICEAcaTY.2 components from CP005986
Complete gene list of ICEAcaTY.2 from CP005986
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Acaty_c17701798697..1798843 [+], 147hypothetical protein
2Acaty_c17711800156..1800359 [+], 204Mobile element protein
3Acaty_c17721800384..1800737 [+], 354Mobile element protein
4Acaty_c17731801374..1802315 [+], 942Cardiolipin synthetase
5Acaty_c17741802317..1803084 [+], 768Ser/Thr protein phosphatase family protein
6Acaty_c17751803307..1803651 [+], 345hypothetical protein
7Acaty_c17761803697..1804203 [+], 507Single-stranded DNA-binding protein
8Acaty_c17781804379..1804594 [+], 216hypothetical protein
9Acaty_c17791804594..1805202 [+], 609Uracil-DNA glycosylase, family 4
10Acaty_c17801805269..1805628 [+], 360hypothetical protein
11Acaty_c17811805777..1806193 [+], 417Rhodopsin
12Acaty_c17821806491..1807057 [+], 567Ser/Thr protein phosphatase family protein
13Acaty_c17831807407..1807817 [-], 411hypothetical protein
14Acaty_c17841807989..1808300 [+], 312hypothetical protein
15Acaty_c17851808476..1808667 [+], 192hypothetical protein
16Acaty_c17861809542..1809769 [+], 228hypothetical protein
17Acaty_c17871809959..1810093 [+], 135hypothetical protein
18Acaty_c17881810122..1811093 [+], 972DNA polymerase I
19Acaty_c17891811178..1813508 [+], 2331DNA topoisomerase III
20Acaty_c17901813586..1813795 [+], 210hypothetical protein
21Acaty_c17911813880..1815064 [+], 1185hypothetical protein
22Acaty_c17921815165..1815512 [+], 348hypothetical protein
23Acaty_c17931815975..1817237 [+], 1263hypothetical protein
24Acaty_c17941817605..1817748 [+], 144hypothetical protein
25Acaty_c17951817745..1819466 [+], 1722Type IV secretory pathway, VirD2 components (relaxase)Relaxase, MOBL Family
26Acaty_c17961819581..1820246 [+], 666conjugal transfer protein precursorTraF, T4SS component 
27Acaty_c17971820700..1821053 [+], 354hypothetical protein
28Acaty_c17981821053..1821652 [+], 600hypothetical protein
29Acaty_c17991821649..1822323 [+], 675Acyltransferase
30Acaty_c18001822320..1823765 [+], 1446Adenine-specific methyltransferase
31Acaty_c18011823771..1824661 [+], 891Thiol:disulfide interchange protein DsbG precursor
32Acaty_c18021824682..1824918 [+], 237hypothetical protein
33Acaty_c18031824949..1825170 [+], 222hypothetical protein
34Acaty_c18041825463..1826356 [+], 894hypothetical protein
35Acaty_c18051826553..1828733 [+], 2181DinG family ATP-dependent helicase YoaA
36Acaty_c18061828718..1829401 [+], 684hypothetical protein
37Acaty_c18071829647..1830234 [+], 588hypothetical protein
38Acaty_c18081830338..1830631 [+], 294hypothetical protein
39Acaty_c18091830825..1830974 [-], 150hypothetical protein
40Acaty_c18101831050..1832024 [+], 975hypothetical protein
41Acaty_c18111833081..1833194 [-], 114hypothetical protein
42Acaty_c18121833759..1834142 [+], 384putative DNA helicaseTraI_F, T4SS component 
43Acaty_c18131834187..1835449 [+], 1263hypothetical protein
44Acaty_c18141835496..1836695 [+], 1200putative DNA helicaseTraI_F, T4SS component 
45Acaty_c18151836969..1837550 [+], 582Lytic transglycosylase catalyticTrbN, T4SS component 
46Acaty_c18161837570..1838430 [+], 861metallophosphoesterase
47Acaty_c18171838508..1839713 [+], 1206DNA polymerase III beta subunit
48Acaty_c18181839769..1839972 [+], 204hypothetical protein
49Acaty_c18191840059..1840304 [+], 246hypothetical protein
50Acaty_c18201840314..1842887 [-], 2574Type IV secretion system protein VirD4
51Acaty_c18211843124..1843285 [-], 162hypothetical protein
52Acaty_c18221843385..1843789 [+], 405hypothetical protein
53Acaty_c18231843895..1844818 [+], 924Phage antirepressor protein
54Acaty_c18241844846..1845184 [+], 339hypothetical protein
55Acaty_c18251845181..1845630 [+], 450hypothetical protein
56Acaty_c18261846456..1846812 [-], 357hypothetical protein
57Acaty_c18271846913..1848217 [-], 1305Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J
58Acaty_c18281848214..1849308 [-], 1095Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj
59Acaty_c18291849313..1849606 [-], 294hypothetical protein
60Acaty_c18301849619..1850899 [-], 1281Conjugative transfer protein TrbITrbI, T4SS component 
61Acaty_c18311850903..1851826 [-], 924Conjugative transfer protein TrbGTrbG, T4SS component 
62Acaty_c18321851809..1852072 [+], 264hypothetical protein
63Acaty_c18331852129..1852821 [-], 693Conjugative transfer protein TrbFTrbF, T4SS component 
64Acaty_c18341853405..1853866 [+], 462hypothetical protein
65Acaty_c18351854301..1855479 [-], 1179Conjugal transfer protein traB
66Acaty_c18361855469..1855726 [-], 258hypothetical protein
67Acaty_c18371855723..1855977 [-], 255hypothetical protein
68Acaty_c18381856494..1856640 [+], 147hypothetical protein
69Acaty_c18391856657..1857430 [+], 774hypothetical protein
70Acaty_c18401857427..1858104 [+], 678Sensory box/GGDEF family protein
71Acaty_c18411858217..1859158 [+], 942hypothetical protein
72Acaty_c18421859124..1859384 [+], 261hypothetical protein
73Acaty_c18431859381..1861093 [+], 1713ATPase involved in DNA repair
74Acaty_c18441861301..1862527 [-], 1227Type I restriction-modification system, specificity subunit S
75Acaty_c18451862641..1865040 [-], 2400Type I restriction-modification system, DNA-methyltransferase subunit M
76Acaty_c18461865872..1867284 [-], 1413HNH endonuclease
77Acaty_c18471868839..1869738 [-], 900ISSod11, transposase
78Acaty_c18481870144..1870392 [-], 249hypothetical protein
79Acaty_c18491870464..1872221 [-], 1758PE-PGRS virulence associated proteinTrbL, T4SS component 
80Acaty_c18501872414..1873193 [-], 780Conjugative transfer protein TrbJ
81Acaty_c18511873420..1874343 [-], 924ATP-binding region, ATPase-like
82Acaty_c18521874697..1875002 [-], 306Integration host factor alpha subunit
83Acaty_c18531875279..1876292 [-], 1014Long-chain-fatty-acid--CoA ligase
84Acaty_c18541876573..1877028 [-], 456hypothetical protein
85Acaty_c18551877166..1877510 [-], 345hypothetical protein
86Acaty_c18561879365..1880777 [-], 1413HNH endonuclease
87Acaty_c18571881497..1881898 [-], 402DNA-binding protein, CopG family
88Acaty_c18581881895..1882089 [-], 195hypothetical protein
89Acaty_c18591882332..1884809 [-], 2478Conjugative transfer protein TrbETrbE, T4SS component 
90Acaty_c18601884812..1885183 [-], 372hypothetical proteinTrbD, T4SS component 
91Acaty_c18611885202..1885594 [-], 393hypothetical protein
92Acaty_c18621887712..1888029 [-], 318diguanylate cyclase/phosphodiesterase
93Acaty_c18631888026..1890815 [-], 2790diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
94Acaty_c18641891287..1892639 [-], 1353hypothetical protein
95Acaty_c18651892658..1893122 [+], 465hypothetical protein
96Acaty_c18661893123..1894190 [-], 1068hypothetical protein
97Acaty_c18671894146..1894733 [+], 588hypothetical protein
98Acaty_c18681895401..1896351 [-], 951Twitching motility protein PilTTraJ_I, T4SS component 
99Acaty_c18691896360..1896836 [-], 477hypothetical protein
100Acaty_c18701896874..1897974 [-], 1101Type II secretion inner membrane protein (PulF)
101Acaty_c18711898051..1899550 [-], 1500General secretion pathway protein EDotB, T4SS component 
102Acaty_c18721899581..1899703 [+], 123hypothetical protein
103Acaty_c18731899683..1900258 [-], 576hypothetical protein
104Acaty_c18741900477..1901835 [-], 1359hypothetical protein
105Acaty_c18751901835..1903469 [-], 1635Lipoprotein
106Acaty_c18761903752..1904360 [-], 609Membrane-bound lytic murein transglycosylase C precursorTrbN, T4SS component 
107Acaty_c18771904819..1905340 [+], 522hypothetical protein
108Acaty_c18781905313..1905438 [-], 126hypothetical protein
109Acaty_c18791905807..1906697 [-], 891hypothetical protein
110Acaty_c18801906757..1907764 [-], 1008Conjugative transfer protein TrbBTrbB, T4SS component 
111Acaty_c18811907761..1908219 [-], 459hypothetical protein
112Acaty_c18821908341..1908634 [-], 294hypothetical protein
113Acaty_c18831908773..1909015 [+], 243VapB protein (antitoxin to VapC)
114Acaty_c18841909012..1909443 [+], 432VapC toxin protein
115Acaty_c18851909440..1909871 [+], 432hypothetical protein
116Acaty_c18861909964..1910848 [+], 885Type I restriction-modification system, DNA-methyltransferase subunit M / Type I restriction-modification system, specificity subunit S
117Acaty_c18871910922..1911449 [+], 528Mobile element protein
118Acaty_c18881912134..1912283 [+], 150hypothetical protein
119Acaty_c18891912288..1912479 [-], 192hypothetical protein
120Acaty_c18901913921..1914379 [-], 459hypothetical protein
121Acaty_c18911915336..1916301 [-], 966Chemotaxis protein CheV
122Acaty_c18921918887..1920881 [-], 1995Signal transduction histidine kinase CheA
123Acaty_c18931920878..1921360 [-], 483hypothetical protein
124Acaty_c18941921363..1921770 [-], 408Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheYVF 
125Acaty_c18951921760..1923559 [-], 1800Methyl-accepting chemotaxis protein
126Acaty_c18961924921..1925487 [-], 567Flagellar motor rotation protein MotA
127Acaty_c18971926249..1928252 [-], 2004Flagellar biosynthesis protein FlhA
128Acaty_c18981928357..1929499 [-], 1143Flagellar biosynthesis protein FlhB
129Acaty_c18991930975..1932321 [-], 1347Flagellum-specific ATP synthase FliI
130Acaty_c19001932547..1932753 [-], 207Flagellum-specific ATP synthase FliI
131Acaty_c19011932750..1933274 [-], 525Flagellar assembly protein FliH
132Acaty_c19021934194..1934526 [+], 333hypothetical protein
133Acaty_c19031934768..1935124 [-], 357RNA polymerase sigma factor for flagellar operon
134Acaty_c19041935505..1935783 [-], 279Flagellar biosynthesis protein FliQ
135Acaty_c19051935784..1936029 [-], 246Flagellar biosynthesis protein FliP
136Acaty_c19061936831..1937931 [-], 1101Flagellar motor switch protein FliM
137Acaty_c19071937943..1939442 [-], 1500hypothetical protein
138Acaty_c19081939439..1940476 [-], 1038Flagellar motor switch protein FliG
139Acaty_c19091940469..1942268 [-], 1800Flagellar M-ring protein FliF
140Acaty_c19101942683..1942967 [-], 285hypothetical protein
141Acaty_c19111943068..1944699 [-], 1632Flagellar hook-associated protein FliD
142Acaty_c19121944827..1946305 [-], 1479Flagellin protein FlaA
143Acaty_c19131946391..1949942 [-], 3552O-antigen biosynthesis protein
144Acaty_c19141951715..1952956 [-], 1242Flagellar hook-associated protein FlgL
145Acaty_c19151952968..1954953 [-], 1986Flagellar hook-associated protein FlgK
146Acaty_c19161955321..1956091 [-], 771Flagellar protein FlgJ (peptidoglycan hydrolase)Tfc22, T4SS component 
147Acaty_c19171956178..1957284 [-], 1107Flagellar P-ring protein FlgI
148Acaty_c19181958291..1958431 [+], 141hypothetical protein
149Acaty_c19191958825..1959568 [-], 744Flagellar basal-body rod protein FlgF
150Acaty_c19201959593..1960843 [-], 1251Flagellar hook protein FlgE
151Acaty_c19211961649..1962011 [-], 363Flagellar basal-body rod protein FlgB
152Acaty_c19221962090..1962878 [-], 789Response regulator of zinc sigma-54-dependent two-component system
153Acaty_c19231963830..1965092 [-], 1263hypothetical protein
154Acaty_c19241965165..1967540 [-], 2376protein of unknown function DUF1738
155Acaty_c19251967606..1968526 [-], 921Methyl-directed repair DNA adenine methylase
156Acaty_c19261968526..1969764 [-], 1239hypothetical protein
157Acaty_c19271969794..1970036 [-], 243hypothetical protein
158Acaty_c19281970518..1971348 [-], 831hypothetical protein
159Acaty_c19291971350..1971697 [-], 348hypothetical protein
160Acaty_c19301972512..1973678 [-], 1167Chromosome (plasmid) partitioning protein ParB
161Acaty_c19311975181..1975468 [-], 288hypothetical protein
162Acaty_c19321976823..1976999 [+], 177hypothetical protein
163Acaty_c19331977963..1978556 [+], 594hypothetical protein
164Acaty_c19341979407..1980282 [+], 876hypothetical protein
165Acaty_c19351980286..1981803 [+], 1518Phage tail length tape-measure protein
166Acaty_c19361981856..1981996 [+], 141hypothetical protein
167Acaty_c19371982207..1983232 [+], 1026Phage integrase
168Acaty_c19391983367..1984137 [-], 771Metal-dependent hydrolases of the beta-lactamase superfamily I
169Acaty_c19401984134..1984949 [-], 816Putative deoxyribonuclease YcfH
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins159Fasta
(1) Castillo A; Tello M; Ringwald K; Acuna LG; Quatrini R; Orellana O (2017). A DNA segment encoding the anticodon stem/loop of tRNA determines the specific recombination of integrative-conjugative elements in Acidithiobacillus species. RNA Biol. :1-8. [PudMed:29168417]
(2) Acuna LG; Cardenas JP; Covarrubias PC; Haristoy JJ; Flores R; Nunez H; Riadi G; Shmaryahu A; Valdes J; Dopson M; Rawlings DE; Banfield JF; Holmes DS; Quatrini R (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PudMed:24250794] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature