ICEberg
I. Information of ICE
ICEberg ID95
Name Tn5252 (part of Tn5253This ICE is derived from experimental literature
FamilyTn5253
OrganismStreptococcus pneumoniae BM6001
Size (bp)~47.5 kb
GC content [Genome] (%)-
Insertion site-
FunctionUV Resistance
Species that ICE can be transferred toStreptococcus pneumoniae
Nucleotide SequenceAF295925 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of Tn5252 (part of Tn5253) is not available.



The graph information of Tn5252 (part of Tn5253) components from AF295925
Incomplete gene list of Tn5252 (part of Tn5253) from AF295925
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-452..1567 [-], 1116Orf28PrgK, T4SS component 
2-1651..3210 [-], 1560Orf27
3-3293..5656 [-], 2364Orf26PrgJ, T4SS component 
4-5601..5957 [-], 357Orf25
5-6011..6244 [-], 234Orf24
6-6445..6753 [-], 309Orf23PrgH, T4SS component 
7-6939..7136 [-], 198Orf22
8-7204..8619 [-], 1416Orf21T4CP 
9-8715..9053 [-], 339Orf20
 
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins9Fasta
(1) Srinivas P; Vijayakumar MN (2000). Genetic and transcriptional analysis of a regulatory region in streptococcal conjugative transposon Tn5252. Plasmid. 44(3):262-74. [PudMed:11078652] experimental
(2) Munoz-Najar U; Vijayakumar MN (1999). An operon that confers UV resistance by evoking the SOS mutagenic response in streptococcal conjugative transposon Tn5252. J Bacteriol. 181(9):2782-8. [PudMed:10217768] experimental
(3) Vijayakumar MN; Kilic AO; Srinivas P (1995). Genetic organization of streptococcal conjugative transposon Tn5252. Dev Biol Stand. 85:63-9. [PudMed:8586242] experimental
(4) Vijayakumar MN; Ayalew S (1993). Nucleotide sequence analysis of the termini and chromosomal locus involved in site-specific integration of the streptococcal conjugative transposon Tn5252. J Bacteriol. 175(9):2713-9. [PudMed:8386725] experimental
(5) Kilic AO; Vijayakumar MN; al-Khaldi SF (1994). Identification and nucleotide sequence analysis of a transfer-related region in the streptococcal conjugative transposon Tn5252. J Bacteriol. 176(16):5145-50. [PudMed:8051031] experimental
(6) Ayoubi P; Kilic AO; Vijayakumar MN (1991). Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252. J Bacteriol. 173(5):1617-22. [PudMed:1847905] experimental
 
experimental experimental literature