ICEberg
I. Information of ICE
ICEberg ID947
Name ICEAcaSM.2 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismAcidithiobacillus caldus s SM-2
Size (bp)208,271
GC content [Genome] (%)58.45
Insertion siteLys-CTT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_015850 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1111830..1307980 
Putative oriT region -
Putative relaxase coordinates: 1255351..1257096; Locus tag: ATC_RS06210;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICEAcaSM.2 is not available.



The graph information of ICEAcaSM.2 components from NC_015850
Complete gene list of ICEAcaSM.2 from NC_015850
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1ATC_RS055101107514..1108419 [-], 906extracellular solute-binding protein
2ATC_RS055151109005..1109289 [-], 285hypothetical protein
3ATC_RS055201110642..1111646 [+], 1005Fic family protein
4ATC_RS055251111830..1112162 [+], 333hypothetical protein
5ATC_RS055351112583..1113797 [+], 1215ISL3 family transposase
6ATC_RS055401113799..1114032 [+], 234hypothetical protein
7ATC_RS055451114019..1116418 [+], 2400DEAD/DEAH box helicase
8ATC_RS055501117121..1117495 [+], 375hypothetical protein
9ATC_RS055551117497..1117796 [+], 300hypothetical protein
10ATC_RS055601117887..1119131 [+], 1245potassium channel protein
11ATC_RS055651119301..1119567 [-], 267hypothetical protein
12ATC_RS055701119912..1120181 [-], 270hypothetical protein
13ATC_RS055751120287..1120682 [+], 396hypothetical protein
14ATC_RS055801120679..1122862 [+], 2184ATP-dependent RecD-like DNA helicaseTraI_F, T4SS component 
15ATC_RS055851122935..1123504 [-], 570ANTAR domain-containing protein
16ATC_RS163401123510..1123869 [-], 360cobalamin biosynthesis protein CbiX
17ATC_RS055901123866..1124657 [-], 792uroporphyrinogen-III C-methyltransferase
18ATC_RS055951124671..1125717 [-], 1047DNA-binding protein YbiB
19ATC_RS056001125684..1128446 [-], 2763nitrate reductase
20ATC_RS056051128443..1128763 [-], 321nitrite reductase (NAD(P)H) small subunit
21ATC_RS056101128768..1131215 [-], 2448NAD(P)/FAD-dependent oxidoreductase
22ATC_RS056151131436..1132680 [-], 1245hypothetical protein
23ATC_RS056201132751..1134151 [-], 1401NarK/NasA family nitrate transporter
24ATC_RS056251134443..1135612 [-], 1170nitrate transporter
25ATC_RS159601135821..1136384 [-], 564hypothetical protein
26ATC_RS056351136499..1137455 [+], 957IS5 family transposase
27ATC_RS056401138049..1138396 [+], 348hypothetical protein
28ATC_RS056451138477..1140633 [+], 2157SAM-dependent DNA methyltransferase
29ATC_RS056501140630..1141265 [+], 636GIY-YIG nuclease family protein
30ATC_RS056551141316..1142605 [+], 1290restriction endonuclease subunit S
31ATC_RS056601142602..1143495 [+], 894hypothetical protein
32ATC_RS163451143984..1144523 [+], 540hypothetical protein
33ATC_RS056701144578..1145795 [+], 1218ISL3-like element ISAtc2 family transposase
34ATC_RS056751146388..1146804 [+], 417hypothetical protein
35ATC_RS056801147175..1148698 [+], 1524IS21 family transposaseIntegrase 
36ATC_RS056851148707..1149492 [+], 786ATP-binding protein
37ATC_RS056901149787..1150050 [+], 264type II toxin-antitoxin system Phd/YefM family antitoxin
38ATC_RS056951150338..1150562 [+], 225hypothetical protein
39ATC_RS057001150577..1151122 [+], 546type II toxin-antitoxin system MqsA family antitoxin
40ATC_RS057051151119..1151571 [+], 453hypothetical protein
41ATC_RS057101151550..1154726 [+], 3177type I restriction endonuclease subunit R
42ATC_RS057151155179..1155358 [+], 180hypothetical protein
43ATC_RS057201155376..1155639 [-], 264hypothetical protein
44ATC_RS057251156723..1157664 [+], 942GTP-binding protein
45ATC_RS057301157666..1158433 [+], 768phosphatase
46ATC_RS163501158656..1159000 [+], 345hypothetical protein
47ATC_RS057401159046..1159552 [+], 507single-stranded DNA-binding protein
48ATC_RS057501159728..1159943 [+], 216hypothetical protein
49ATC_RS057551159943..1160551 [+], 609uracil-DNA glycosylase
50ATC_RS057601160618..1160977 [+], 360hypothetical protein
51ATC_RS057651161126..1161542 [+], 417hypothetical protein
52ATC_RS057701161852..1162649 [+], 798metallophosphoesterase
53ATC_RS057751162860..1163390 [+], 531hypothetical protein
54ATC_RS057801163456..1163986 [+], 531hypothetical protein
55ATC_RS057851164023..1164427 [+], 405hypothetical protein
56ATC_RS057901164486..1164755 [+], 270hypothetical protein
57ATC_RS057951164760..1165074 [+], 315hypothetical protein
58ATC_RS058001165221..1168982 [-], 3762restriction-modification protein
59ATC_RS058051169014..1169445 [-], 432hypothetical protein
60ATC_RS058101169552..1169926 [+], 375hypothetical protein
61ATC_RS058151170012..1170539 [+], 528hypothetical protein
62ATC_RS058201170578..1171564 [+], 987P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
63ATC_RS058251171710..1172501 [+], 792hypothetical protein
64ATC_RS058301173219..1173821 [+], 603hypothetical proteinTrbN, T4SS component 
65ATC_RS058351174104..1175738 [+], 1635PilN family type IVB pilus formation outer membrane protein
66ATC_RS058401175738..1177096 [+], 1359hypothetical protein
67ATC_RS058451177318..1177887 [+], 570type IV pilus biogenesis protein PilP
68ATC_RS058501177889..1179517 [+], 1629secretion system protein ETraJ_I, T4SS component 
69ATC_RS058551179517..1180617 [+], 1101membrane protein
70ATC_RS058601180654..1181130 [+], 477hypothetical protein
71ATC_RS058651181139..1182089 [+], 951PilUTraJ_I, T4SS component 
72ATC_RS163551182286..1182816 [+], 531hypothetical protein
73ATC_RS159651182829..1184343 [+], 1515shufflon system plasmid conjugative transfer pilus tip adhesin PilV
74ATC_RS058751184351..1184719 [-], 369type II toxin-antitoxin system HicB family antitoxin
75ATC_RS058801184716..1184976 [-], 261type II toxin-antitoxin system HicA family toxin
76ATC_RS058851185481..1185873 [+], 393hypothetical protein
77ATC_RS058901185892..1186263 [+], 372hypothetical proteinTrbD, T4SS component 
78ATC_RS058951186266..1189769 [+], 3504conjugal transfer protein TrbETrbE, T4SS component 
79ATC_RS059001190048..1190242 [+], 195type II toxin-antitoxin system HicA family toxin
80ATC_RS059051190239..1190640 [+], 402type II toxin-antitoxin system HicB family antitoxin
81ATC_RS059101191076..1191909 [+], 834hypothetical protein
82ATC_RS059151192358..1192702 [+], 345hypothetical protein
83ATC_RS059201192678..1193295 [+], 618hypothetical protein
84ATC_RS059251193371..1194522 [+], 1152hypothetical protein
85ATC_RS163601194544..1194693 [+], 150hypothetical protein
86ATC_RS159701194811..1194996 [-], 186hypothetical protein
87ATC_RS059301194995..1195774 [+], 780conjugative transfer protein TrbJ
88ATC_RS059351195784..1197685 [+], 1902P-type conjugative transfer protein TrbL
89ATC_RS059401197765..1198025 [+], 261hypothetical protein
90ATC_RS059451198177..1200771 [-], 2595hypothetical protein
91ATC_RS059501200776..1202491 [-], 1716site-specific DNA-methyltransferase
92ATC_RS059551202805..1204517 [-], 1713DUF2326 domain-containing protein
93ATC_RS059601204514..1204807 [-], 294hypothetical protein
94ATC_RS059651204829..1205119 [-], 291hypothetical protein
95ATC_RS059701205460..1207103 [+], 1644transposase
96ATC_RS059751207078..1207629 [-], 552hypothetical protein
97ATC_RS059801207646..1207885 [-], 240hypothetical protein
98ATC_RS059851208239..1208493 [+], 255hypothetical protein
99ATC_RS059901208490..1208747 [+], 258hypothetical protein
100ATC_RS059951208782..1209915 [+], 1134conjugal transfer protein TraB
101ATC_RS060001210487..1211179 [+], 693type IV secretion system proteinTrbF, T4SS component 
102ATC_RS060051211515..1212438 [+], 924conjugal transfer protein TrbGTrbG, T4SS component 
103ATC_RS060101212442..1213758 [+], 1317TrbI proteinTrbI, T4SS component 
104ATC_RS060151213771..1214064 [+], 294hypothetical protein
105ATC_RS060201214068..1215162 [+], 1095ParA family protein
106ATC_RS060251215159..1216451 [+], 1293ParB/RepB/Spo0J family partition protein
107ATC_RS163651216366..1218039 [-], 1674hypothetical protein
108ATC_RS060351218029..1218472 [-], 444hypothetical protein
109ATC_RS060401218482..1219420 [-], 939phage antirepressor Ant
110ATC_RS163701219521..1220159 [-], 639hypothetical protein
111ATC_RS060501220444..1223020 [+], 2577conjugal transfer protein TraGT4CP 
112ATC_RS060551223355..1223735 [+], 381hypothetical protein
113ATC_RS060601223799..1224044 [-], 246hypothetical protein
114ATC_RS060651224245..1225432 [-], 1188DNA polymerase III subunit beta
115ATC_RS060701225635..1226216 [-], 582peptidase M56TrbN, T4SS component 
116ATC_RS060751226535..1230521 [-], 3987hypothetical protein
117ATC_RS060801230514..1233429 [-], 2916hypothetical protein
118ATC_RS060851233644..1234111 [+], 468hypothetical protein
119ATC_RS060901235295..1236269 [-], 975hypothetical protein
120ATC_RS060951237105..1237560 [-], 456type I-E CRISPR-associated protein Cas6/Cse3/CasE
121ATC_RS061001237557..1238339 [-], 783hypothetical protein
122ATC_RS061051238339..1239022 [-], 684hypothetical protein
123ATC_RS061101239007..1241187 [-], 2181ATP-dependent DNA helicase DinG
124ATC_RS061151241498..1241722 [-], 225superinfection immunity protein
125ATC_RS061201241753..1241989 [-], 237hypothetical protein
126ATC_RS061251242010..1242900 [-], 891hypothetical protein
127ATC_RS061301242906..1244369 [-], 1464site-specific DNA-methyltransferase
128ATC_RS061351244362..1245060 [-], 699acyltransferase
129ATC_RS061401245060..1245539 [-], 480hypothetical protein
130ATC_RS061451245836..1246429 [-], 594hypothetical protein
131ATC_RS061501246433..1247029 [-], 597hypothetical protein
132ATC_RS061551247029..1247574 [-], 546hypothetical protein
133ATC_RS061601247869..1248057 [-], 189hypothetical protein
134ATC_RS061701249446..1249979 [-], 534hypothetical protein
135ATC_RS061751250080..1250463 [-], 384hypothetical protein
136ATC_RS061801250500..1250736 [-], 237hypothetical protein
137ATC_RS061851250735..1251016 [+], 282hypothetical protein
138ATC_RS061901251261..1251500 [-], 240hypothetical protein
139ATC_RS061951251531..1252406 [-], 876hypothetical protein
140ATC_RS163801252633..1253550 [-], 918hypothetical protein
141ATC_RS062051254571..1255236 [-], 666conjugal transfer proteinTraF, T4SS component 
142ATC_RS062101255351..1257096 [-], 1746DUF3363 domain-containing proteinRelaxase, MOBL Family
143ATC_RS062151257069..1257875 [-], 807hypothetical protein
144ATC_RS062201257868..1258302 [-], 435glycerol acyltransferase
145ATC_RS062251258316..1259482 [-], 1167hypothetical protein
146ATC_RS062301259717..1260874 [-], 1158DNA (cytosine-5-)-methyltransferase
147ATC_RS062351260996..1261211 [-], 216hypothetical protein
148ATC_RS062401261233..1263824 [-], 2592hypothetical protein
149ATC_RS062451263829..1265565 [-], 1737site-specific DNA-methyltransferase
150ATC_RS062501265631..1267274 [-], 1644transposase
151ATC_RS062551267362..1267682 [-], 321addiction module antidote protein, HigA family
152ATC_RS062601268229..1268561 [-], 333hypothetical protein
153ATC_RS062651268697..1268900 [-], 204hypothetical protein
154ATC_RS062701268978..1271308 [-], 2331DNA topoisomerase III
155ATC_RS062751271393..1272364 [-], 972DNA polymerase I
156ATC_RS062801272520..1272783 [-], 264hypothetical protein
157ATC_RS062851273329..1273532 [-], 204hypothetical protein
158ATC_RS062901273602..1273793 [-], 192hypothetical protein
159ATC_RS062951273969..1274289 [-], 321hypothetical protein
160ATC_RS063001274345..1274701 [-], 357hypothetical protein
161ATC_RS063051274971..1275357 [+], 387hypothetical protein
162ATC_RS063101275411..1276616 [-], 1206hypothetical protein
163ATC_RS063151276627..1277079 [-], 453hypothetical protein
164ATC_RS063201277142..1277717 [-], 576hypothetical protein
165ATC_RS063251278605..1278961 [-], 357hypothetical protein
166ATC_RS163851279023..1279520 [-], 498HU family DNA-binding protein
167ATC_RS063401279710..1280270 [-], 561transglycosylaseVirB1, T4SS component 
168ATC_RS063451280302..1281045 [-], 744hypothetical protein
169ATC_RS063501281109..1281408 [-], 300hypothetical protein
170ATC_RS063551281417..1282433 [-], 1017hypothetical protein
171ATC_RS063601282536..1282808 [-], 273hypothetical protein
172ATC_RS063651282868..1284016 [-], 1149hypothetical protein
173ATC_RS159851284089..1285066 [-], 978hypothetical protein
174ATC_RS063751285436..1285798 [-], 363hypothetical protein
175ATC_RS063801285809..1286939 [-], 1131hypothetical protein
176ATC_RS063851286939..1289086 [-], 2148DUF2958 domain-containing protein
177ATC_RS063901289099..1291888 [-], 2790DUF1738 domain-containing protein
178ATC_RS063951291952..1292872 [-], 921DNA adenine methylase
179ATC_RS064001292869..1294092 [-], 1224hypothetical protein
180ATC_RS064051294122..1294571 [-], 450RusA family crossover junction endodeoxyribonuclease
181ATC_RS064101294840..1295673 [-], 834hypothetical protein
182ATC_RS159901295670..1296662 [-], 993hypothetical protein
183ATC_RS064201296659..1296847 [-], 189hypothetical protein
184ATC_RS064251296844..1298010 [-], 1167hypothetical protein
185ATC_RS064301298007..1298795 [-], 789hypothetical protein
186ATC_RS064351298792..1299079 [-], 288transcriptional regulator
187ATC_RS163901299327..1299557 [-], 231hypothetical protein
188ATC_RS163951299638..1300291 [+], 654hypothetical protein
189ATC_RS064451300402..1300602 [+], 201hypothetical protein
190ATC_RS064501300854..1301630 [+], 777hypothetical protein
191ATC_RS064551301703..1302296 [+], 594hypothetical protein
192ATC_RS064601303147..1304031 [+], 885phage recombination protein Bet
193ATC_RS064651304035..1305552 [+], 1518heme peroxidase
194ATC_RS164001305542..1305745 [+], 204DUF1289 domain-containing protein
195ATC_RS164051305763..1306083 [+], 321DNA-binding protein
196ATC_RS064751306337..1307980 [+], 1644transposase
197ATC_RS160001308012..1308785 [+], 774site-specific integrase
198ATC_RS064901308915..1309358 [-], 444transcriptional repressor
199ATC_RS064951309529..1311733 [-], 2205TonB-dependent receptor
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins193Fasta
(1) Acuna LG; Cardenas JP; Covarrubias PC; Haristoy JJ; Flores R; Nunez H; Riadi G; Shmaryahu A; Valdes J; Dopson M; Rawlings DE; Banfield JF; Holmes DS; Quatrini R (2013). Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One. 8(11):e78237. [PudMed:24250794] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature