ICEberg
I. Information of ICE
ICEberg ID938
Name CTnPi1 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPrevotella intermedia s OMA14
Size (bp)52132
GC content [Genome] (%)46.75
Insertion siteTTTTCNNNNAAAA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP014597 (complete ICE sequence in this genome)
Replicon-
Genome coordinates302941..355072 
Putative oriT region -
Putative relaxase coordinates: 328388..329617; Locus tag: PIOMA14_I_0292;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CTnPi1 is not available.



The graph information of CTnPi1 components from AP014597
Complete gene list of CTnPi1 from AP014597
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PIOMA14_I_0270299423..302767 [-], 3345ATP-dependent helicase
2PIOMA14_I_0271303311..304546 [+], 1236bacteriophage integraseIntegrase 
3PIOMA14_I_0272304561..304923 [+], 363conserved hypothetical protein
4PIOMA14_I_0273304973..305275 [-], 303conserved hypothetical protein
5PIOMA14_I_0274305313..305591 [-], 279hypothetical protein
6PIOMA14_I_0275305813..306166 [+], 354conserved hypothetical protein
7PIOMA14_I_0276306150..306470 [+], 321conserved hypothetical protein
8PIOMA14_I_0277306559..312045 [-], 5487DNA methylase
9PIOMA14_I_0278312032..312463 [-], 432conserved hypothetical protein with DUF1896 domain
10PIOMA14_I_0279312488..312586 [+], 99conserved hypothetical protein
11PIOMA14_I_0280312601..314730 [-], 2130DNA topoisomerase I
12PIOMA14_I_0281314765..316159 [-], 1395conserved hypothetical protein with DUF3945 domain
13PIOMA14_I_0282316445..318271 [+], 1827putative glycine C-acetyltransferase
14PIOMA14_I_0283318900..320060 [+], 1161hypothetical protein
15PIOMA14_I_0284320062..322344 [+], 2283hypothetical protein
16PIOMA14_I_0285322337..324565 [+], 2229ABC transporter ATP-binding protein
17PIOMA14_I_0286324567..325061 [+], 495conserved hypothetical protein
18PIOMA14_I_0287325113..325343 [+], 231hypothetical protein
19PIOMA14_I_0289325465..325713 [+], 249probable partial tetracycline resistance element mobilization regulatory protein RteC
20PIOMA14_I_0290326110..326181 [+], 72conserved hypothetical protein
21PIOMA14_I_0291326362..328374 [-], 2013coupling protein T4CPT4CP 
22PIOMA14_I_0292328388..329617 [-], 1230probable relaxaseRelaxase, MOBP Family
23PIOMA14_I_0293329602..330015 [-], 414conserved hypothetical protein
24PIOMA14_I_0294330908..331189 [+], 282putative conjugal transfer protein TraA
25PIOMA14_I_0295331205..331597 [+], 393putative partial conjugative transposon protein TraA
26PIOMA14_I_0296331581..332009 [+], 429conserved hypothetical protein with DUF3408 domain
27PIOMA14_I_0297332035..332388 [+], 354conserved hypothetical protein with DUF3408 domain
28PIOMA14_I_0298332385..332969 [+], 585conserved hypothetical protein
29traA332999..333739 [+], 741conjugative transposon protein TraA
30PIOMA14_I_0300333727..334317 [+], 591conserved hypothetical protein
31traE334495..334713 [+], 219probable conjugative transposon protein TraE
32PIOMA14_I_0302334796..335029 [+], 234conserved hypothetical protein
33PIOMA14_I_0303335317..336990 [+], 1674RNA-directed DNA polymerase
34PIOMA14_I_0304336987..337208 [+], 222hypothetical protein
35traF337213..337533 [+], 321conjugative transposon protein TraF
36traG337587..340073 [+], 2487conjugative transposon protein TraG
37traI340106..340735 [+], 630conjugative transposon protein TraITrbJ, T4SS component 
38traJ340738..341814 [+], 1077conjugative transposon protein TraJ
39traK341834..342457 [+], 624conjugative transposon protein TraK
40PIOMA14_I_0310342454..342786 [+], 333conserved hypothetical protein
41traM342737..344104 [+], 1368conjugative transposon protein TraM
42traN344143..345063 [+], 921conjugative transposon protein TraN
43traO345065..345649 [+], 585conjugative transposon protein TraO
44traP345649..346494 [+], 846conjugative transposon protein TraP
45traQ346522..346983 [+], 462putative conjugative transposon protein TraQ
46PIOMA14_I_0316346967..347476 [+], 510lysozyme-related protein
47PIOMA14_I_0317347590..349344 [+], 1755conserved hypothetical protein
48PIOMA14_I_0318349362..350141 [+], 780hypothetical protein
49PIOMA14_I_0319350547..350801 [-], 255hypothetical protein
50PIOMA14_I_0320350828..352102 [-], 1275conserved hypothetical proteinwith PcfJ-like domain
51PIOMA14_I_0321352119..352649 [-], 531antirestriction protein
52PIOMA14_I_0322352670..353086 [-], 417conserved hypothetical protein with PcfK domain
53PIOMA14_I_0323353104..353694 [-], 591conserved hypothetical protein
54PIOMA14_I_0324353707..353988 [-], 282hypothetical protein
55PIOMA14_I_0325354000..354218 [-], 219hypothetical protein
56PIOMA14_I_0326354231..354440 [-], 210hypothetical protein
57PIOMA14_I_0327354638..354760 [+], 123conserved hypothetical protein
58PIOMA14_I_0328354879..355055 [+], 177conserved hypothetical protein
59PIOMA14_I_0329355346..356407 [+], 1062porphyromonas-type peptidyl-arginine deiminase
60PIOMA14_I_0330356460..357344 [+], 885carbon-nitrogen family hydrolase
61PIOMA14_I_0331357358..357867 [+], 510conserved hypothetical protein
62PIOMA14_I_0332357864..358424 [+], 561putative maltose O-acetyltransferase
63PIOMA14_I_0333358549..359448 [+], 900pseudouridine synthase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins57Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature