ICEberg
I. Information of ICE
ICEberg ID937
Name CTnHyb This ICE is derived from experimental literature
FamilyUnclassified
OrganismBacteroides fragilis BF-HMW615
Size (bp)131471
GC content [Genome] (%)46.08
Insertion siteGAAAGTGAA or TTTGA
Functiontetracycline, kanamycin, metronidazole and spectinomycin resistance
Species that ICE can be transferred toBacteroides fragilis 638R
Nucleotide SequenceKJ816753 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..131471 
Putative oriT region -
Putative relaxase coordinates: 28951..30216; Gene: HMPREF1204_02934;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CTnHyb is not available.



The graph information of CTnHyb components from KJ816753
Complete gene list of CTnHyb from KJ816753
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1HMPREF1204_00026206..772 [+], 567DNA-binding protein
2HMPREF1204_00025769..2016 [+], 1248tyrosine recombinase
3HMPREF1204_000242340..2981 [+], 642hypothetical protein
4HMPREF1204_000233115..3483 [+], 369DNA-binding protein
5HMPREF1204_000223527..3868 [+], 342DNA-binding protein
6HMPREF1204_000213871..4977 [+], 1107mobilization protein
7HMPREF1204_000205178..6077 [+], 900hypothetical protein
8HMPREF1204_000196234..7205 [+], 972hypothetical protein
9HMPREF1204_000187193..7972 [+], 780hypothetical protein
10HMPREF1204_000177978..8739 [+], 762Ser/Thr phosphatase
11HMPREF1204_000168961..9413 [+], 453hypothetical protein
12HMPREF1204_000159410..9742 [+], 333hypothetical protein
13HMPREF1204_000149801..10211 [+], 411hypothetical protein
14HMPREF1204_0001310104..10358 [-], 255hypothetical protein
15HMPREF1204_0001210404..11576 [+], 1173integrase
16HMPREF1204_0001111661..12923 [+], 1263recombinase
17HMPREF1204_0001013065..13385 [+], 321DNA-binding protein
18HMPREF1204_0000913397..13711 [+], 315hypothetical protein
19HMPREF1204_0000813749..14999 [+], 1251integrase
20HMPREF1204_0000715067..15894 [+], 828hypothetical protein
21HMPREF1204_0000616183..16581 [+], 399hypothetical protein
22HMPREF1204_0000516578..17816 [+], 1239hypothetical protein
23HMPREF1204_0000417834..18451 [+], 618hypothetical protein
24HMPREF1204_0000318703..19281 [-], 579acetyl transferase
25HMPREF1204_0000219295..19792 [-], 4985-nitroimidazole antibiotic resistance protein
26HMPREF1204_0292421360..21623 [-], 264hypothetical protein
27HMPREF1204_0292521625..21903 [-], 279hypothetical protein
28HMPREF1204_0292621900..22109 [-], 210DNA-binding protein
29HMPREF1204_0292722654..22953 [+], 300hypothetical protein
30HMPREF1204_0292823076..24506 [+], 1431ATPase
31HMPREF1204_0292924741..25454 [+], 714DNA-binding protein
32HMPREF1204_0293025773..26912 [+], 1140integrase
33HMPREF1204_0293126938..27375 [+], 438hypothetical protein
34HMPREF1204_0293227487..28329 [+], 843hypothetical protein
35HMPREF1204_0293328559..28954 [+], 396hypothetical protein
36HMPREF1204_0293428951..30216 [+], 1266relaxaseRelaxase, MOBP Family
37HMPREF1204_0293530235..30783 [+], 549hypothetical protein
38HMPREF1204_0293630805..31110 [+], 306hypothetical protein
39HMPREF1204_0293731156..32625 [-], 1470hypothetical protein
40HMPREF1204_0293832612..34306 [-], 1695hypothetical protein
41HMPREF1204_0293934379..37291 [-], 2913hypothetical protein
42HMPREF1204_0294037301..39490 [-], 2190hypothetical protein
43HMPREF1204_0294139504..40304 [-], 801DNA-binding protein
44HMPREF1204_0294240323..42272 [-], 1950hypothetical protein
45HMPREF1204_0294342275..43417 [-], 1143DNA methyltransferase
46HMPREF1204_0294443414..44550 [-], 1137restriction endonuclease HgaIA
47HMPREF1204_0294544592..44804 [-], 213XRE family transcriptional regulator
48HMPREF1204_0294645374..46714 [+], 1341conjugal transfer protein TraG
49HMPREF1204_0294746935..49475 [+], 2541hypothetical protein
50HMPREF1204_0294849490..50215 [+], 726hypothetical protein
51HMPREF1204_0294950243..51007 [+], 765hypothetical protein
52HMPREF1204_0295051051..51881 [+], 831hypothetical protein
53HMPREF1204_0295151897..52298 [+], 402hypothetical protein
54HMPREF1204_0295252298..53428 [+], 1131membrane protein
55HMPREF1204_0295353494..53895 [+], 402hypothetical protein
56HMPREF1204_0295453899..54513 [+], 615conjugal transfer protein TraK
57HMPREF1204_0295554526..54945 [+], 420hypothetical protein
58HMPREF1204_0295654929..56071 [+], 1143conjugal transfer protein TraM
59HMPREF1204_0295756141..56986 [+], 846conjugal transfer protein TraN
60HMPREF1204_0295856986..57531 [+], 546hypothetical protein
61HMPREF1204_0295957540..58193 [+], 654hypothetical protein
62HMPREF1204_0296058260..59168 [+], 909hypothetical protein
63HMPREF1204_0296159249..61438 [+], 2190mobilization proteinT4CP 
64HMPREF1204_0296261492..61989 [+], 498lysozyme
65HMPREF1204_0296362078..63286 [+], 1209integrase
66HMPREF1204_0296463536..64747 [-], 1212transposase
67HMPREF1204_0296565012..66229 [+], 1218major facilitator transporterAR 
68HMPREF1204_0296666484..66576 [+], 93hypothetical protein
69HMPREF1204_0296766651..67031 [+], 381hypothetical protein
70HMPREF1204_0296867356..67808 [+], 453hypothetical protein
71HMPREF1204_0296967801..68595 [+], 795aminoglycoside 3'-phosphotransferaseAR 
72HMPREF1204_0297068871..69296 [+], 426transcriptional regulator
73HMPREF1204_0297169276..69698 [-], 423hypothetical protein
74HMPREF1204_0297269831..70316 [+], 486hypothetical protein
75HMPREF1204_0297370313..71083 [+], 771hypothetical protein
76HMPREF1204_0297471305..72717 [-], 1413hypothetical protein
77HMPREF1204_0297572989..73189 [-], 201MerR family transcripitonal regulator
78HMPREF1204_0297673463..74071 [+], 609hypothetical protein
79HMPREF1204_0297774159..75457 [+], 1299integraseIntegrase 
80HMPREF1204_0297875584..76048 [+], 4653'-adenylyltransferase
81HMPREF1204_0297976171..76488 [+], 318hypothetical protein
82HMPREF1204_0298076469..77209 [+], 741SAM-dependent methyltransferase
83HMPREF1204_0298177247..77684 [+], 438phosphohydrolase
84HMPREF1204_0298277850..79139 [-], 1290transposase
85HMPREF1204_0298379425..81350 [+], 1926tetracycline resistance protein tetQAR 
86HMPREF1204_0298481350..82189 [+], 840hypothetical protein
87HMPREF1204_0298582233..83354 [+], 1122RND transporter
88HMPREF1204_0298683351..86464 [+], 3114multidrug transporter AcrB
89HMPREF1204_0298786465..87823 [+], 1359multidrug transporter
90HMPREF1204_0298888443..89036 [+], 594sugar isomerase
91HMPREF1204_0298989033..89221 [+], 189MFS transporter
92HMPREF1204_0299089420..90598 [+], 1179hypothetical protein
93HMPREF1204_0299190589..91146 [+], 558hypothetical protein
94HMPREF1204_0299291309..92007 [-], 699peptidase M23
95HMPREF1204_0299392159..92920 [+], 762hypothetical protein
96HMPREF1204_0299492944..93168 [+], 225hypothetical protein
97HMPREF1204_0299593206..94801 [+], 1596hypothetical protein
98HMPREF1204_0299694832..95974 [+], 1143hypothetical protein
99HMPREF1204_0299795971..96456 [+], 486hypothetical protein
100HMPREF1204_0299896437..97138 [+], 702hypothetical protein
101HMPREF1204_0299997156..97839 [+], 684hypothetical protein
102HMPREF1204_0300097933..98595 [+], 663hypothetical protein
103HMPREF1204_0300198611..99432 [+], 822peptidase M23
104HMPREF1204_0300299747..101546 [+], 1800hypothetical protein
105HMPREF1204_03003101629..104085 [+], 2457DNA primase
106HMPREF1204_03004104090..105646 [+], 1557glucosaminidaseTcpG, T4SS component 
107HMPREF1204_03005105643..105825 [+], 183hypothetical protein
108HMPREF1204_03006105898..106503 [+], 606hypothetical protein
109HMPREF1204_03007106510..108432 [+], 1923DNA primase
110HMPREF1204_03008108539..108904 [-], 366hypothetical protein
111HMPREF1204_03009108907..109200 [-], 294hypothetical protein
112HMPREF1204_03010109595..110857 [+], 1263ATPase AAA
113HMPREF1204_03011110998..112404 [-], 1407membrane protein
114HMPREF1204_03012112459..113910 [-], 1452recombinase
115HMPREF1204_03013114119..115003 [-], 885hypothetical protein
116HMPREF1204_03014115083..115577 [-], 495hypothetical protein
117HMPREF1204_03015115567..115980 [-], 414hypothetical protein
118HMPREF1204_03016116059..116505 [-], 447hypothetical protein
119HMPREF1204_03017116530..117642 [-], 1113hypothetical protein
120HMPREF1204_03018117897..118520 [+], 624serine recombinase
121HMPREF1204_03019118537..119220 [+], 684hypothetical protein
122HMPREF1204_03020119224..119760 [+], 537hypothetical protein
123HMPREF1204_03021119955..120254 [+], 300thioredoxin
124HMPREF1204_03022120295..120840 [+], 546hypothetical protein
125HMPREF1204_03023120855..121100 [+], 246hypothetical protein
126HMPREF1204_03024121284..121721 [+], 438hypothetical protein
127HMPREF1204_03025121718..121924 [+], 207hypothetical protein
128HMPREF1204_03026121934..122170 [+], 237hypothetical protein
129HMPREF1204_03027122195..122374 [+], 180transcriptional regulator
130HMPREF1204_03028122540..122653 [-], 114hypothetical protein
131HMPREF1204_03029122675..123166 [-], 492hypothetical protein
132HMPREF1204_03030123170..123736 [-], 567ribonucleotide-diphosphate reductase subunit alpha
133HMPREF1204_03031124288..124566 [-], 279hypothetical protein
134HMPREF1204_03032124574..125329 [-], 756hypothetical protein
135HMPREF1204_03033125449..125874 [-], 426single-stranded DNA-binding protein
136HMPREF1204_03034125928..126188 [-], 261DNA-binding protein
137HMPREF1204_03035126571..127125 [-], 555hypothetical protein
138HMPREF1204_03036128396..128872 [+], 477hypothetical protein
139HMPREF1204_03037128678..129064 [-], 387single-stranded DNA-binding protein
140HMPREF1204_03038129101..129286 [+], 186hypothetical protein
141HMPREF1204_03039129894..130076 [-], 183ribonuclease P
142HMPREF1204_03040130092..130676 [-], 585hypothetical protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins142Fasta
(1) Husain F; Veeranagouda Y; Boente R; Tang K; Mulato G; Wexler HM (2014). The Ellis Island Effect: A novel mobile element in a multi-drug resistant Bacteroides fragilis clinical isolate includes a mosaic of resistance genes from Gram-positive bacteria. Mob Genet Elements. 4:e29801. [PudMed:25165618] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature