ICEberg
I. Information of ICE
ICEberg ID89
Name SXT(ET) This ICE is derived from experimental literature
FamilySXT/R391
OrganismVibrio cholerae O1 biovar El Tor 1999
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAY035340 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of SXT(ET) is not available.



The graph information of SXT(ET) components from AY035340
Incomplete gene list of SXT(ET) from AY035340
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1traF1..945 [-], 945TraFTraF_F, T4SS component 
2intI91202..2290 [-], 1089site-specific tyrosine recombinaseIntegrase 
3dfrA12453..2926 [+], 474dihydrofolate reductaseAR 
4-3031..3456 [+], 426unknown
5-3654..4064 [+], 411unknown
6-4135..4497 [+], 363unknown
7-4597..5298 [+], 702unknown
8-5295..5540 [-], 246unknown
9-5971..6202 [-], 232unknown
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins9Fasta
(1) Pande K; Mendiratta DK; Vijayashri D; Thamke DC; Narang P (2012). SXT constin among Vibrio cholerae isolates from a tertiary care hospital. Indian J Med Res. 135:346-50. [PudMed:22561621] experimental
(2) Hochhut B; Lotfi Y; Mazel D; Faruque SM; Woodgate R; Waldor MK (2001). Molecular analysis of antibiotic resistance gene clusters in vibrio cholerae O139 and O1 SXT constins. Antimicrob Agents Chemother. 45(11):2991-3000. [PudMed:11600347] experimental
 
experimental experimental literature