ICEberg
I. Information of ICE
ICEberg ID842
Name ICESz1 This is a predicted ICE derived from literature
FamilyTn916
OrganismStreptococcus equi subsp. Zooepidemicus H70
Size (bp)47573
GC content [Genome] (%)35.56
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFM204884 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1399879..1447451 
Putative oriT region -
Putative relaxase coordinates: 1415776..1417107; Locus tag: SZO_12770;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESz1 is not available.



The graph information of ICESz1 components from FM204884
Complete gene list of ICESz1 from FM204884
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SZO_125101394947..1395312 [+], 366putative membrane protein
2SZO_125201395331..1395975 [+], 645phosphoglycerate mutase family protein
3SZO_125301396812..1398017 [-], 1206conserved hypothetical protein
4SZO_125401398231..1399028 [-], 798transposase
5SZO_125501399115..1399846 [-], 732transposase
6SZO_125601399879..1400253 [-], 375conserved hypothetical protein
7SZO_126001401148..1401357 [-], 210putative DNA-binding protein
8SZO_126101401482..1402141 [-], 660conserved hypothetical protein
9SZO_126501407161..1407340 [-], 180putative regulatory protein
10SZO_126801408925..1409206 [-], 282putative membrane protein
11SZO_126901409213..1409371 [-], 159conserved hypothetical protein
12SZO_127001409368..1411050 [-], 1683site-specific recombinaseIntegrase 
13SZO_127101411791..1412204 [-], 414conserved hypothetical protein
14SZO_127201412447..1413325 [-], 879radical SAM superfamily protein
15SZO_127301413344..1413886 [-], 543conserved hypothetical protein
16SZO_127401413893..1414156 [-], 264conserved hypothetical protein
17SZO_127501414218..1415117 [-], 900putative DNA-bind protein
18SZO_127601415420..1415770 [+], 351conserved hypothetical protein
19SZO_127701415776..1417107 [+], 1332relaxase/mobilisation proteinRelaxase, MOBP Family
20SZO_127801417179..1417838 [-], 660conserved hypothetical protein
21SZO_127901417879..1426629 [-], 8751putative helicase
22SZO_128001426713..1428131 [-], 1419putative DNA-binding protein
23SZO_128101428150..1428329 [-], 180putative regulatory protein
24SZO_128201428413..1430119 [-], 1707DNA topoisomerase
25SZO_128301430215..1431744 [-], 1530putative membrane protein
26SZO_128401431719..1431958 [-], 240conserved hypothetical protein
27SZO_128501431971..1434094 [-], 2124putative membrane protein
28SZO_128601434098..1436524 [-], 2427putative conjugal transfer proteinPrgJ, T4SS component 
29SZO_128701436436..1436825 [-], 390putative conjugative transposon membrane protein
30SZO_128801436829..1437092 [-], 264putative exported protein
31SZO_128901437110..1437973 [-], 864putative membrane protein
32SZO_129201440963..1441274 [-], 312conserved hypothetical protein
33SZO_129301441625..1443103 [-], 1479ABC transporter protein
34SZO_129601444952..1445437 [-], 486conserved hypothetical protein
35SZO_129701445434..1446285 [-], 852putative DNA replication protein
36SZO_129801446282..1447136 [-], 855putative replication initiation protein
37SZO_129811447151..1447432 [-], 282conserved hypothetical protein
38SZO_129901447451..1449082 [-], 1632putative RNA methyltransferase
39SZO_130001449160..1450590 [-], 1431cell envelope-related transcriptional attenuator domain protein
40SZO_130101450788..1451282 [-], 495putative shikimate kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
(1) Chancey ST; Agrawal S; Schroeder MR; Farley MM; Tettelin H; Stephens DS (2015). Composite mobile genetic elements disseminating macrolide resistance in Streptococcus pneumoniae. Front Microbiol. 6:26. [PudMed:25709602] in_silico
(2) Holden MT; Heather Z; Paillot R; Steward KF; Webb K; Ainslie F; Jourdan T; Bason NC; Holroyd NE; Mungall K; Quail MA; Sanders M; Simmonds M; Willey D; Brooks K; Aanensen DM; Spratt BG; Jolley KA; Maiden MC; Kehoe M; Chanter N; Bentley SD; Robinson C; Maskell DJ; Parkhill J; Waller AS (2009). Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. PLoS Pathog. 5(3):e1000346. [PudMed:19325880]
 
in_silico in silico analysis literature