ICEberg
I. Information of ICE
ICEberg ID840
Name ICESsuZJ20091101-1 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus suis ZJ20091101
Size (bp)69,397
GC content [Genome] (%)38.98
Insertion siteIn SSU1262
FunctionAntibiotic resistance genes: erm(B), tet(O)
Species that ICE can be transferred to-
Nucleotide SequenceKX077882 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates347..69723 
Putative oriT region -
Putative relaxase coordinates: 32654..33619;   Family:  MOBV


II. ICE interaction with IME/CIME/

The interaction information of ICESsuZJ20091101-1 is not available.



The graph information of ICESsuZJ20091101-1 components from KX077882
Complete gene list of ICESsuZJ20091101-1 from KX077882
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-441..1880 [-], 1440site-specific recombinase
2-1873..3489 [-], 1617site-specific recombinase
3-3489..5063 [-], 1575site-specific recombinaseIntegrase 
4-5162..5302 [-], 141hypothetical protein
5-5618..6022 [-], 405hypothetical protein
6-6248..6976 [-], 729hypothetical protein
7-6994..7839 [-], 846ABC transporter, ATP-binding protein
8-7863..10604 [-], 2742lanthionine biosynthesis protein LanM
9-10849..11853 [-], 1005transposase
10-11848..11961 [+], 114hypothetical protein
11-11956..14106 [-], 2151ABC transporter ATP-binding protein
12-14112..17012 [-], 2901lanthionine biosynthesis protein LanM
13-17039..17218 [-], 180hypothetical protein
14-17236..17415 [-], 180hypothetical protein
15-17531..17962 [-], 432mobile element protein
16-18059..18571 [-], 513mobile element protein
17-18692..18871 [-], 180hypothetical protein
18-19060..19923 [+], 864putative transcriptional regulator PlcR
19-20030..21904 [-], 1875relaxase
20-21891..22256 [-], 366hypothetical protein
21-22259..22621 [-], 363hypothetical protein
22-22964..23206 [-], 243hypothetical protein
23-23260..24327 [-], 1068abortive infection bacteriophage resistance
24-24505..24801 [-], 297hypothetical protein
25-24851..25240 [-], 390methyl-accepting chemotaxis protein
26-25237..25464 [-], 228hypothetical protein
27-25518..26594 [-], 1077hypothetical protein
28-26658..28301 [-], 1644site-specific recombinase
29-28469..29323 [+], 855hypothetical protein
30-29421..29630 [+], 210putative transcriptional regulator
31-29647..29811 [+], 165epsilon antitoxin
32-29840..30577 [+], 738rRNA (adenine-N(6)-) -methyltransferaseAR 
33-31021..31197 [-], 177site-specific recombinase
34-31252..31515 [-], 264hypothetical protein
35-31515..31745 [-], 231bacterial seryl-tRNA synthetase related protein
36-31791..32645 [-], 855chromosome (plasmid) partitioning protein ParB
37-32654..33619 [-], 966hypothetical proteinRelaxase, MOBV Family
38-34144..35010 [-], 867hypothetical protein
39-35046..35561 [-], 516RNA polymerase ECF-type sigma factor
40-35628..35798 [-], 171RNA polymerase ECF-type sigma factor
41-35882..36307 [-], 426hypothetical protein
42-36402..36914 [-], 513hypothetical protein
43-37627..39546 [-], 1920tetracycline resistance protein TetOAR 
44-39913..40230 [-], 318TnpV
45-40227..40958 [-], 732hypothetical protein
46-41054..41344 [-], 291hypothetical protein
47-41358..41657 [-], 300hypothetical protein
48-41728..48552 [-], 6825SNF2 family protein
49-48601..49152 [-], 552hypothetical protein
50-49136..49327 [-], 192putative calcium-binding protein
51-49328..54223 [-], 4896agglutinin receptorPrgB, T4SS component 
52-54220..54450 [-], 231agglutinin receptor
53-54516..55271 [-], 756hypothetical protein
54-55261..56265 [-], 1005hypothetical protein
55-56385..59186 [-], 2802hypothetical proteinPrgK, T4SS component 
56-59188..61539 [-], 2352TrsE-like proteinPrgJ, T4SS component 
57-61496..61849 [-], 354hypothetical protein
58-61911..62765 [-], 855hypothetical protein
59-62784..63026 [-], 243hypothetical protein
60-63044..64861 [-], 1818hypothetical proteinT4CP 
61-64861..65349 [-], 489hypothetical protein
62-65426..66010 [-], 585hypothetical protein
63-66013..66246 [-], 234hypothetical protein
64-66255..66638 [-], 384hypothetical protein
65-66649..67077 [-], 429hypothetical protein
66-67061..68416 [-], 1356DNA-cytosine methyltransferase
67-68565..69383 [-], 819hypothetical protein
68-69380..69553 [-], 174hypothetical protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins68Fasta
(1) Huang J; Ma J; Shang K; Hu X; Liang Y; Li D; Wu Z; Dai L; Chen L; Wang L (2016). Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. Front Cell Infect Microbiol. 0.331944444. [PudMed:27774436]