ICEberg
I. Information of ICE
ICEberg ID824
Name ICESpST344-2 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus pneumoniae ST344 NT 110 58
Size (bp)-
GC content [Genome] (%)[39.7]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP007593 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICESpST344-2 is not available.



The graph information of ICESpST344-2 components from CP007593
Incomplete gene list of ICESpST344-2 from CP007593
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SpnNT_00939972564..974675 [+], 2112hypothetical protein
2iap974672..975673 [+], 1002putative endopeptidase p60 precursor
3SpnNT_00941975688..976605 [+], 918Conjugative transposon protein TcpCOrf13_Tn, T4SS component 
4tetM976981..978900 [+], 1920Tetracycline resistance protein TetM from transposon TnFO1AR 
5SpnNT_00943979246..979599 [-], 354anaerobic benzoate catabolism transcriptional regulator
6SpnNT_00944980104..980526 [+], 423RNA polymerase sigma factor
7SpnNT_00945980523..980753 [+], 231Helix-turn-helix domain protein
8SpnNT_00946981214..981417 [+], 204Excisionase from transposon
9SpnNT_00947981499..982716 [+], 1218IntegraseIntegrase 
10SpnNT_00948982986..983576 [+], 591hypothetical protein
11SpnNT_00949983576..984412 [+], 837hypothetical protein
12SpnNT_00950984695..984994 [+], 300hypothetical protein
13SpnNT_00951984984..985472 [+], 489hypothetical protein
14SpnNT_00952985472..987349 [+], 1878conjugal transfer coupling protein TraGT4CP 
15SpnNT_00953987370..987612 [+], 243hypothetical protein
16SpnNT_00954987629..988483 [+], 855hypothetical protein
17SpnNT_00955988537..988896 [+], 360PrgI family protein
18SpnNT_00956988847..989629 [+], 783Type IV secretory pathway, VirB4 components
19SpnNT_00957989636..991204 [+], 1569type-IV secretion system protein TraC
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins12Fasta
(1) Hilty M; Wuthrich D; Salter SJ; Engel H; Campbell S; Sa-Leao R; de Lencastre H; Hermans P; Sadowy E; Turner P; Chewapreecha C; Diggle M; Pluschke G; McGee L; Koseoglu Eser O; Low DE; Smith-Vaughan H; Endimiani A; Kuffer M; Dupasquier M; Beaudoing E; Weber J; Bruggmann R; Hanage WP; Parkhill J; Hathaway LJ; Muhlemann K; Bentley SD (2014). Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages. Genome Biol Evol. 6(12):3281-94. [PudMed:25480686] in_silico
 
in_silico in silico analysis literature