ICEberg
I. Information of ICE
ICEberg ID813
Name ICESp23FST81 [ICESpPN1] This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus pneumoniae PN1
Size (bp)81097
GC content [Genome] (%)34.49
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceKC488257 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..81097 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICESp23FST81 [ICESpPN1] is not available.



The graph information of ICESp23FST81 [ICESpPN1] components from KC488257
Complete gene list of ICESp23FST81 [ICESpPN1] from KC488257
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-423..596 [+], 174hypothetical protein
2repA593..1372 [+], 780replication initiation protein A
3-1373..1474 [+], 102hypothetical protein
4-1471..2829 [+], 1359putative DNA methylase
5-2813..3262 [+], 450hypothetical protein
6-3255..3635 [+], 381arsenate reductase-like glutaredoxin family protein
7-3648..3881 [+], 234hypothetical protein
8-3884..4546 [+], 663putative caax amino protease family protein
9-4676..5266 [+], 591hypothetical protein
10-5266..6075 [+], 810hypothetical protein
11-6096..6824 [+], 729truncated traD/traG family proteinT4CP 
12-6845..7087 [+], 243replication initiation protein A
13-7104..7958 [+], 855putative membrane proteinPrgH, T4SS component 
14-8012..8371 [+], 360hypothetical protein
15-8322..10679 [+], 2358hypothetical proteinPrgJ, T4SS component 
16-10691..13504 [+], 2814M23 peptidase domain proteinPrgK, T4SS component 
17-14149..14313 [-], 165hypothetical protein
18-14776..15186 [+], 411Ig domain protein, 2 domain protein
19-21532..21816 [+], 285hypothetical protein
20-21830..22129 [+], 300hypothetical protein
21-22624..22806 [+], 183hypothetical protein
22-22969..23151 [+], 183hypothetical protein
23-23238..23414 [+], 177hypothetical protein
24-23446..23553 [+], 108hypothetical protein
25-23682..24419 [+], 738ABC-type antimicrobial peptide transport system
26-24432..26447 [+], 2016ABC transporter permease
27-26528..28102 [+], 1575histidine kinase
28-28083..28679 [+], 597response regulator
29-28791..31745 [+], 2955putative lantibiotic biosynthesis protein
30-31758..33881 [+], 2124putative lantibiotic transporter protein
31-33991..34632 [+], 642putative parvulin-like peptidyl-prolyl isomerasePrgL, T4SS component 
32-34642..35139 [+], 498hypothetical protein
33-35661..36527 [+], 867putative transcriptional regulator
34-36680..36814 [+], 135hypothetical protein
35-37118..37369 [+], 252hypothetical protein
36-37598..37900 [+], 303hypothetical protein
37-37897..39243 [+], 1347putative protein kinase
38-39257..40174 [+], 918ABC transporter
39-40171..40971 [+], 801putative ABC-2 transporter permease protein
40-41129..41602 [+], 474transposase
41-41859..42080 [+], 222hypothetical protein
42-42346..42615 [+], 270putative excisionase
43-42691..44199 [+], 1509putative integraseIntegrase 
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins43Fasta
(1) Hilty M; Wuthrich D; Salter SJ; Engel H; Campbell S; Sa-Leao R; de Lencastre H; Hermans P; Sadowy E; Turner P; Chewapreecha C; Diggle M; Pluschke G; McGee L; Koseoglu Eser O; Low DE; Smith-Vaughan H; Endimiani A; Kuffer M; Dupasquier M; Beaudoing E; Weber J; Bruggmann R; Hanage WP; Parkhill J; Hathaway LJ; Muhlemann K; Bentley SD (2014). Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages. Genome Biol Evol. 6(12):3281-94. [PudMed:25480686] in_silico
(2) Wyres KL; van Tonder A; Lambertsen LM; Hakenbeck R; Parkhill J; Bentley SD; Brueggemann AB (2013). Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974. BMC Genomics. 0.930555556. [PudMed:23879707] in_silico
 
in_silico in silico analysis literature