ICEberg
I. Information of ICE
ICEberg ID774
Name ICEH-1(168) This is a predicted ICE derived from literature
FamilyUnclassified
OrganismMycoplasma fermentans JER
Size (bp)15642
GC content [Genome] (%)28.16
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_017509 (complete ICE sequence in this genome)
Replicon-
Genome coordinates882062..897703 
Putative oriT region -
Putative relaxase coordinates: 896219..897616; Locus tag: MHP168_RS03570;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICEH-1(168) is not available.



The graph information of ICEH-1(168) components from NC_017509
Complete gene list of ICEH-1(168) from NC_017509
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MHP168_RS03515877867..881742 [-], 3876hypothetical protein
2MHP168_RS03520882411..883628 [-], 1218hypothetical proteinIntegrase 
3MHP168_RS03525883748..883954 [+], 207hypothetical protein
4MHP168_RS03530883935..885584 [+], 1650hypothetical protein
5MHP168_RS03535885632..889255 [-], 3624hypothetical protein
6MHP168_RS03540889233..890150 [-], 918hypothetical protein
7MHP168_RS03550892411..894081 [-], 1671integraseT4CP 
8MHP168_RS03555894122..894388 [-], 267hypothetical protein
9MHP168_RS03560894702..895742 [-], 1041hypothetical protein
10MHP168_RS03565895749..896201 [-], 453single-stranded DNA-binding protein
11MHP168_RS03570896219..897616 [-], 1398hypothetical proteinRelaxase, MOBL Family
12MHP168_RS03575897965..900166 [+], 2202hypothetical protein
13MHP168_RS03580900200..901798 [+], 1599ABC transporter ATP-binding protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins10Fasta
(1) Guerillot R; Siguier P; Gourbeyre E; Chandler M; Glaser P (2014). The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries. Genome Biol Evol. 6(2):260-72. [PudMed:24418649] in_silico
 
in_silico in silico analysis literature