ICEberg
I. Information of ICE
ICEberg ID773
Name ICEF-III(JER) This is a predicted ICE derived from literature
FamilyUnclassified
OrganismMycoplasma capricolum subsp. capricolum ATCC 27343
Size (bp)23199
GC content [Genome] (%)24.55
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_014552 (complete ICE sequence in this genome)
Replicon-
Genome coordinates310795..333993 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEF-III(JER) is not available.



The graph information of ICEF-III(JER) components from NC_014552
Complete gene list of ICEF-III(JER) from NC_014552
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MFE_RS01295307476..308708 [-], 1233hypothetical protein
2MFE_RS04405309456..309791 [-], 336hypothetical protein
3MFE_RS01325309940..310542 [+], 603Holliday junction branch migration protein RuvA
4MFE_RS01330310523..310804 [+], 282ATP-binding protein
5MFE_RS01335310899..311777 [+], 879hypothetical protein
6MFE_RS04410312038..312313 [+], 276hypothetical protein
7MFE_RS01340312616..313482 [+], 867hypothetical protein
8MFE_RS01345313485..313979 [+], 495hypothetical protein
9MFE_RS01350313996..314454 [+], 459hypothetical protein
10MFE_RS01355315028..315252 [+], 225hypothetical protein
11MFE_RS01360315255..315725 [+], 471hypothetical protein
12MFE_RS01365315739..316176 [+], 438hypothetical protein
13MFE_RS01370316158..316340 [+], 183hypothetical protein
14MFE_RS01375316359..317066 [+], 708hypothetical protein
15MFE_RS01380317050..318240 [+], 1191DNA methylase
16MFE_RS01385318264..318764 [+], 501hypothetical protein
17MFE_RS01390318751..319650 [+], 900hypothetical protein
18MFE_RS01395319637..320227 [+], 591DUF4116 domain-containing protein
19MFE_RS01400320233..320676 [+], 444hypothetical protein
20MFE_RS01405321530..321712 [+], 183hypothetical protein
21MFE_RS01410321921..323519 [+], 1599hypothetical protein
22MFE_RS01415323618..323986 [+], 369hypothetical protein
23MFE_RS01420323993..325417 [+], 1425hypothetical protein
24MFE_RS01425325404..328145 [+], 2742trsE
25MFE_RS01430328195..332535 [+], 4341hypothetical protein
26MFE_RS01435332611..333828 [+], 1218hypothetical proteinIntegrase 
27MFE_RS01445334751..337354 [+], 2604protein translocase subunit SecDF
28MFE_RS01450337459..338310 [+], 852tRNA pseudouridine(55) synthase TruB
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins22Fasta
(1) Guerillot R; Siguier P; Gourbeyre E; Chandler M; Glaser P (2014). The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries. Genome Biol Evol. 6(2):260-72. [PudMed:24418649] in_silico
 
in_silico in silico analysis literature