ICEberg
I. Information of ICE
ICEberg ID769
Name ICEC(27343) This is a predicted ICE derived from literature
FamilyUnclassified
OrganismMycoplasma hyopneumoniae 168
Size (bp)24377
GC content [Genome] (%)23.74
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_007633 (complete ICE sequence in this genome)
Replicon-
Genome coordinates661010..685386 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEC(27343) is not available.



The graph information of ICEC(27343) components from NC_007633
Complete gene list of ICEC(27343) from NC_007633
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MCAP_RS02780657320..658849 [-], 1530ribonuclease Y
2MCAP_RS02785659001..660038 [-], 1038recombinase RecA
3MCAP_RS02790660079..660549 [-], 471nicotinamide-nucleotide amidohydrolase family protein
4MCAP_RS02795661212..662042 [+], 831hypothetical protein
5MCAP_RS04410662358..662591 [+], 234hypothetical protein
6MCAP_RS04415663103..663597 [+], 495hypothetical protein
7MCAP_RS02805663622..664455 [+], 834hypothetical protein
8MCAP_RS02810664567..665148 [+], 582BspA family leucine-rich repeat surface protein
9MCAP_RS02815665317..665532 [+], 216hypothetical protein
10MCAP_RS02820666111..668111 [+], 2001type IV secretory system conjugative DNA transfer family proteinT4CP 
11MCAP_RS02825668143..669558 [+], 1416ImmA/IrrE family metallo-endopeptidase
12MCAP_RS02830669691..671172 [+], 1482hypothetical protein
13MCAP_RS02835671184..671384 [+], 201hypothetical protein
14MCAP_RS02840671489..671815 [+], 327hypothetical protein
15MCAP_RS02845671819..673462 [+], 1644hypothetical protein
16MCAP_RS02850673465..676302 [+], 2838conjugal transfer protein TraE
17MCAP_RS02855676321..676944 [+], 624hypothetical protein
18MCAP_RS02860676937..680959 [+], 4023hypothetical protein
19MCAP_RS02870682175..682540 [+], 366hypothetical protein
20MCAP_RS02875682755..683672 [+], 918ParA family protein
21MCAP_RS02880683782..685014 [+], 1233hypothetical proteinIntegrase 
22MCAP_RS02885685488..685865 [-], 378DivIVA domain-containing protein
23MCAP_RS02890685929..686438 [+], 510Holliday junction resolvase RecU
24MCAP_RS02895686410..686946 [-], 537DnaD family protein
25MCAP_RS02900687004..687276 [-], 273HU family DNA-binding protein
26MCAP_RS02905687308..688306 [-], 999glycerol-3-phosphate dehydrogenase
27MCAP_RS02910688308..689615 [-], 1308ribosome biogenesis GTPase Der
28MCAP_RS02915689615..690283 [-], 669cytidylate kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
(1) Guerillot R; Siguier P; Gourbeyre E; Chandler M; Glaser P (2014). The diversity of prokaryotic DDE transposases of the mutator superfamily, insertion specificity, and association with conjugation machineries. Genome Biol Evol. 6(2):260-72. [PudMed:24418649] in_silico
 
in_silico in silico analysis literature