ICEberg
I. Information of ICE
ICEberg ID768
Name ICEBpSAFR-032 This is a predicted ICE derived from literature
FamilyICEBs1
OrganismBacillus pumilus SAFR-032
Size (bp)29295
GC content [Genome] (%)34.8
Insertion siteguaA
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_009848 (complete ICE sequence in this genome)
Replicon-
Genome coordinates588472..617766 
Putative oriT region -
Putative relaxase coordinates: 594736..595836; Locus tag: BPUM_RS02920;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICEBpSAFR-032 is not available.



The graph information of ICEBpSAFR-032 components from NC_009848
Complete gene list of ICEBpSAFR-032 from NC_009848
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1BPUM_RS02875584152..586356 [+], 2205DUF4129 domain-containing protein
2BPUM_RS02880586543..588084 [+], 1542GMP synthase (glutamine-hydrolyzing)
3BPUM_RS02885588472..589590 [+], 1119XRE family transcriptional regulator
4BPUM_RS02890589910..590296 [-], 387helix-turn-helix domain-containing protein
5BPUM_RS02895590425..590712 [+], 288XRE family transcriptional regulator
6BPUM_RS02900590737..590979 [+], 243hypothetical protein
7BPUM_RS02905591669..592052 [+], 384DUF961 domain-containing protein
8BPUM_RS02910592338..593294 [+], 957hypothetical protein
9BPUM_RS02915593328..594662 [+], 1335cell division protein FtsKYdcQ, T4SS component 
10BPUM_RS02920594736..595836 [+], 1101replication initiation factor domain-containing proteinRelaxase, MOBT Family
11BPUM_RS02925596092..596349 [+], 258DUF3850 domain-containing protein
12BPUM_RS02930596356..596634 [+], 279hypothetical protein
13BPUM_RS02935596713..597363 [+], 651hypothetical protein
14BPUM_RS02940597424..599967 [+], 2544hypothetical protein
15BPUM_RS02945600356..601180 [-], 825hypothetical protein
16BPUM_RS02950601409..602194 [+], 786DNA methylase
17BPUM_RS02955602266..602562 [+], 297hypothetical protein
18BPUM_RS02960602552..602833 [+], 282hypothetical protein
19BPUM_RS02965602862..603254 [+], 393hypothetical protein
20BPUM_RS02970603251..604480 [+], 1230CpaF family proteinVirB11, T4SS component 
21BPUM_RS02975604467..605279 [+], 813hypothetical protein
22BPUM_RS02980605284..606045 [+], 762hypothetical protein
23BPUM_RS02985606052..606411 [+], 360hypothetical protein
24BPUM_RS02990607010..607258 [+], 249hypothetical protein
25BPUM_RS02995607239..608234 [+], 996conjugal transfer proteinYddB, T4SS component 
26BPUM_RS03000608246..608506 [+], 261hypothetical proteinYddC, T4SS component 
27BPUM_RS03005608518..608985 [+], 468conjugal transfer proteinYddD, T4SS component 
28BPUM_RS03010608963..611419 [+], 2457DUF87 domain-containing proteinYddE, T4SS component 
29BPUM_RS03015612190..614571 [+], 2382hypothetical proteinYddG, T4SS component 
30BPUM_RS03020614568..615545 [+], 978endopeptidaseYddH, T4SS component 
31BPUM_RS03025615555..616046 [+], 492hypothetical protein
32BPUM_RS03030616074..616283 [+], 210DUF3173 domain-containing protein
33BPUM_RS03035616280..616492 [+], 213hypothetical protein
34BPUM_RS03040616489..617766 [+], 1278site-specific integraseIntegrase 
35BPUM_RS03045618040..619098 [-], 1059AraC family transcriptional regulator
36BPUM_RS03050619099..620760 [-], 16622-isopropylmalate synthase 2
37BPUM_RS03055621324..622211 [-], 888AraC family transcriptional regulator
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
(1) Tirumalai MR; Fox GE (2013). An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores. Extremophiles. 17(5):767-74. [PudMed:23812891] in_silico
 
in_silico in silico analysis literature