ICEberg
I. Information of ICE
ICEberg ID73
Name ICEF-II This ICE is derived from experimental literature
FamilyICEF-I/II
OrganismMycoplasma fermentans PG18
Size (bp)22331
GC content [Genome] (%)-
Insertion sitepdhA, orf251
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAY168955; AY168956; AY168957; AY168958; AY168960; AY168959; AY168961; AY168962; AY168963; AY168964; AY168965 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEF-II is not available.



The graph information of ICEF-II components from AY168957
Incomplete gene list of ICEF-II from AY168957
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..1413 [+], 1413hypothetical protein
2-1489..2709 [+], 1221ORF406
3-3430..4149 [+], 720ICEF-IIB ORF1
4-4380..4571 [+], 192ICEF-IIB ORF2
5-4592..5794 [+], 1203putative relaxase
6-5804..5983 [+], 180ICEF-IIB ORF6


The graph information of ICEF-II components from AY168956
Incomplete gene list of ICEF-II from AY168956
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..2127 [+], 2127ICEF-IIA ORF19
2-2717..3643 [+], 927ICEF-IIA ORF21
3ICEF-IIA ORF223692..4857 [+], 1166-
4-5233..5374 [-], 142putative ABC transporter ATP-binding cassette protein
5tnp5510..5902 [-], 393IS3 family transposase


The graph information of ICEF-II components from AY168955
Incomplete gene list of ICEF-II from AY168955
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-38..724 [+], 687ORF228
2-2301..4403 [-], 2103ORF700
3ORF2514507..5130 [-], 624-
4-5373..6092 [+], 720ICEF-IIA ORF1
5-6323..6514 [+], 192ICEF-IIA ORF2
6-6535..7737 [+], 1203ICEF-IIA ORF3
7-7747..8214 [+], 468ICEF-IIA ORF4
8-8214..10433 [+], 2220ICEF-IIA ORF5T4CP 
9-10444..10632 [+], 189ICEF-IIA ORF6
10-10634..10979 [+], 346ICEF-IIA ORF7


The graph information of ICEF-II components from AY168958
Incomplete gene list of ICEF-II from AY168958
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..763 [+], 763ICEF-IIB ORF22Integrase 


The graph information of ICEF-II components from AY168965
Incomplete gene list of ICEF-II from AY168965
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..1479 [+], 1479ICEF-II ORF17T4CP 
2-1460..2143 [+], 684ICEF-II ORF18
3-2189..4332 [+], 2144ICEF-II ORF19


The graph information of ICEF-II components from AY168964
Incomplete gene list of ICEF-II from AY168964
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..1151 [+], 1151P57 lipoprotein
2-1266..1547 [+], 282ICEF-II ORF15
3ICEF-II ORF161547..2736 [+], 1190-
4-2752..5565 [+], 2814ICEF-II ORF17T4CP 


The graph information of ICEF-II components from AY168963
Incomplete gene list of ICEF-II from AY168963
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..103 [+], 103ICEF-II ORF12
2-103..357 [+], 255ICEF-II ORF13
3-381..1949 [+], 1569P57 lipoprotein
4-2064..2345 [+], 282ICEF-II ORF15
5ICEF-II ORF162345..3534 [+], 1190-
6-3550..4890 [+], 1341ICEF-II ORF17


The graph information of ICEF-II components from AY168962
Incomplete gene list of ICEF-II from AY168962
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..608 [+], 608ICEF-II ORF7
2-617..856 [+], 240ICEF-II ORF8
3-869..1585 [+], 717ICEF-II ORF11
4-1595..2146 [+], 552ICEF-II ORF12
5-2146..2400 [+], 255ICEF-II ORF13
6-2424..2847 [+], 424P57 lipoprotein


The graph information of ICEF-II components from AY168961
Incomplete gene list of ICEF-II from AY168961
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..1648 [+], 1648ICEF-II ORF5T4CP 
2-1659..1847 [+], 189ICEF-II ORF6
3-1849..2796 [+], 948ICEF-II ORF7
4-3057..3773 [+], 717ICEF-II ORF11
5-3783..4237 [+], 455ICEF-II ORF12


The graph information of ICEF-II components from AY168960
Incomplete gene list of ICEF-II from AY168960
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..363 [-], 363ORF472
2-937..1656 [+], 720ICEF-IIC ORF1
3ICEF-IIC ORF21887..2078 [+], 192-
4-2099..3301 [+], 1203ICEF-IIC ORF3
5-3311..3778 [+], 468ICEF-IIC ORF4
6-3778..4355 [+], 578ICEF-IIC ORF5


The graph information of ICEF-II components from AY168959
Incomplete gene list of ICEF-II from AY168959
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..763 [+], 763ICEF-IIC ORF22Integrase 
2ORF2421343..2072 [-], 730-
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Calcutt MJ; Lewis MS; Wise KS (2002). Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18. J Bacteriol. 184(24):6929-41. [PudMed:12446643] experimental
 
experimental experimental literature