ICEberg
I. Information of ICE
ICEberg ID72
Name ICEF-I This ICE is derived from experimental literature
FamilyICEF-I/II
OrganismMycoplasma fermentans PG18
Size (bp)23773
GC content [Genome] (%)28.63
Insertion sitepdhA, orf251
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAY168953 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates2674..26451 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEF-I is not available.



The graph information of ICEF-I components from AY168953
Complete gene list of ICEF-I from AY168953
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1licA18..746 [-], 729LicA
2lepA834..2633 [+], 1800LepA
3-2918..3637 [+], 720ICEF-IA ORF1
4-3909..5111 [+], 1203ICEF-IA ORF3
5-5121..5588 [+], 468ICEF-IA ORF4
6ICEF-IA ORF55588..7807 [+], 2220-
7-7818..8006 [+], 189ICEF-IA ORF6
8-8008..8955 [+], 948ICEF-IA ORF7
9-8964..9152 [+], 189ICEF-IA ORF8a
10-9142..10008 [+], 867ICEF-IA ORF9
11-10079..10243 [+], 165ICEF-IA ORF10
12-10259..10972 [+], 714ICEF-IA ORF11
13-10982..11533 [+], 552single-stranded DNA binding protein
14-11533..11787 [+], 255ICEF-IA ORF13
15-11811..13379 [+], 1569P57' lipoprotein
16-13494..13775 [+], 282ICEF-IA ORF15
17-13775..14965 [+], 1191ICEF-IA ORF16
18-14981..17794 [+], 2814TraE/TrsE family NTPaseT4CP 
19-17775..18461 [+], 687ICEF-IA ORF18
20ICEF-IA ORF1818543..21851 [+], 3309-
21-23223..23702 [+], 480ICEF-IA ORF20
22-23935..24861 [+], 927ICEF-IA ORF21
23-24909..26075 [+], 1167ICEF-IA ORF22Integrase 
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins19Fasta
(1) Calcutt MJ; Lewis MS; Wise KS (2002). Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18. J Bacteriol. 184(24):6929-41. [PudMed:12446643] experimental
 
experimental experimental literature