ICEberg
I. Information of ICE
ICEberg ID69
Name ICEA(5632)-I This ICE is derived from experimental literature
FamilyICEA5632
OrganismMycoplasma agalactiae 5632
Size (bp)27235
GC content [Genome] (%)27.37[29.62]
Insertion site-
Function-
Species that ICE can be transferred toMycoplasma agalactiae
Nucleotide SequenceFP671138 (complete ICE sequence in this genome)
Replicon-
Genome coordinates813253..840487 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEA(5632)-I is not available.



The graph information of ICEA(5632)-I components from FP671138
Complete gene list of ICEA(5632)-I from FP671138
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MAGa6860811209..811784 [+], 576Hypothetical protein, predicted lipoprotein
2MAGa6870812450..812956 [+], 507Hypothetical protein
3MAGa6880813253..814389 [-], 1137CDS22Integrase 
4MAGa6890814993..815187 [+], 195-
5MAGa6900815174..815845 [+], 672CDSH
6MAGa6910816036..816875 [+], 840CDSG
7MAGa6920816966..817319 [+], 354Hypothetical protein
8MAGa6930817490..818752 [+], 1263CDSF
9MAGa6940818878..820455 [-], 1578CDS14
10MAGa6950820773..821225 [-], 453CDSE
11MAGa6960821600..826153 [-], 4554CDS19
12MAGa6970826159..828945 [-], 2787CDS17
13MAGa6980828932..829372 [-], 441CDS27
14MAGa6990829519..830592 [-], 1074CDS16
15MAGa7000830597..830962 [-], 366CDS15
16MAGa7010830965..831219 [-], 255CDS13
17MAGa7020831368..832348 [-], 981CDS7
18MAGa7030832398..834410 [-], 2013CDS5T4CP 
19MAGa7040834505..835158 [-], 654CDSD
20MAGa7050835211..835771 [-], 561CDSC
21MAGa7060835860..836312 [-], 453CDSB
22MAGa7070836349..837014 [-], 666CDS11
23MAGa7080837030..837434 [-], 405CDS12
24MAGa7090837440..838453 [-], 1014CDSA
25MAGa7100839693..840487 [-], 795CDS1
26MAGa7110841086..841640 [+], 555Pseudogene of Transposase
27MAGa7120841622..842305 [+], 684-
28MAGa7130842799..843599 [+], 801Hypothetical protein, predicted lipoprotein
29rplL843682..844053 [-], 37250S ribosomal protein L7/L12
30rplJ844080..844601 [-], 52250S ribosomal protein L10
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins23Fasta
(1) Nouvel LX; Sirand-Pugnet P; Marenda MS; Sagne E; Barbe V; Mangenot S; Schenowitz C; Jacob D; Barre A; Claverol S; Blanchard A; Citti C (2010). Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics. 0.518055556. [PudMed:20122262]
(2) Marenda M; Barbe V; Gourgues G; Mangenot S; Sagne E; Citti C (2006). A new integrative conjugative element occurs in Mycoplasma agalactiae as chromosomal and free circular forms. J Bacteriol. 188(11):4137-41. [PudMed:16707706] experimental
 
experimental experimental literature