ICEberg
I. Information of ICE
ICEberg ID672
Name ICE_COH1_tRNALys This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus agalactiae COH1
Size (bp)-
GC content [Genome] (%)-
Insertion sitetRNALys
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAAJR01000042; AAJR01000065; AAJR01000007 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 1706..2938; Locus tag: SAN_2123;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICE_COH1_tRNALys is not available.



The graph information of ICE_COH1_tRNALys components from AAJR01000042
Incomplete gene list of ICE_COH1_tRNALys from AAJR01000042
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAN_20869816..10532 [+], 717transcriptional regulator, MerR family
2SAN_208710571..11041 [-], 471acetyltransferase, GNAT family
3SAN_208811013..11471 [-], 459MutT/nudix family protein
4SAN_208911458..11601 [-], 144conserved hypothetical protein
5SAN_209011607..12077 [-], 471conserved hypothetical protein
6SAN_209112404..12895 [+], 492acetyltransferase, GNAT family
7SAN_209212888..14156 [+], 1269ATPase, AAA family
8SAN_209314229..14399 [-], 171hypothetical protein
9SAN_209414611..15732 [-], 1122site-specific recombinase, phage integrase familyIntegrase 
10SAN_209515782..16108 [-], 327Domain of unknown function (DUF771) superfamily
11SAN_209616301..16933 [-], 633conserved hypothetical protein
12SAN_209717014..17805 [-], 792surface protein PrgCPrgC, T4SS component 
13SAN_209817822..18150 [-], 329conserved hypothetical protein


The graph information of ICE_COH1_tRNALys components from AAJR01000065
Incomplete gene list of ICE_COH1_tRNALys from AAJR01000065
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAN_2105236..784 [-], 549conserved hypothetical protein
2SAN_2106784..2157 [-], 1374CHAP domain familyPrgK, T4SS component 
3SAN_21072653..4653 [-], 2001membrane protein, putativeYddG, T4SS component 
4SAN_21084669..6939 [-], 2271conjugal transfer protein, interruption-CYddE, T4SS component 
5SAN_21096969..7169 [-], 201conjugal transfer protein, interruption-N-related proteinYddE, T4SS component 
6SAN_21107190..7453 [-], 264conserved hypothetical proteinYddD, T4SS component 
7SAN_21117612..7878 [-], 267conserved hypothetical protein
8SAN_21127899..8852 [-], 954conserved hypothetical proteinYddB, T4SS component 
9SAN_21138905..9121 [-], 217conserved hypothetical protein


The graph information of ICE_COH1_tRNALys components from AAJR01000007
Incomplete gene list of ICE_COH1_tRNALys from AAJR01000007
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAN_21201..833 [-], 833conserved hypothetical protein
2SAN_21211030..1329 [-], 300transcriptional regulator, Cro/CI family
3SAN_21221313..1690 [-], 378conserved hypothetical protein
4SAN_21231706..2938 [-], 1233transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
5SAN_21243226..4887 [-], 1662FtsK/SpoIIIE family proteinYdcQ, T4SS component 
6SAN_21254964..5425 [-], 462conserved hypothetical protein
7SAN_21265447..5743 [-], 297conserved hypothetical protein
8SAN_21275803..8394 [-], 2592cell wall surface anchor family proteinPrgB, T4SS component 
9SAN_21288483..10744 [-], 2262UnknownPrgA, T4SS component 
10SAN_212910760..11023 [-], 264conserved hypothetical protein
11SAN_213011043..11504 [-], 462Unknown
12SAN_213111489..11800 [-], 312conserved hypothetical protein
13SAN_213211793..12224 [-], 432transcriptional regulator, Cro/CI family
14SAN_213313355..13669 [+], 315transcriptional regulator, Cro/CI family
15SAN_213413682..13834 [-], 153hypothetical protein
16SAN_213513869..14207 [+], 339transcriptional regulator, Cro/CI family
17SAN_213614214..14636 [+], 423Unknown
18SAN_213714711..15079 [-], 369lipoprotein, putative
19SAN_213815083..15421 [-], 339Unknown
20SAN_213915418..15711 [-], 294DNA-damage-inducible protein J, putative
21CAMP-216245..17003 [-], 759CAMP factorVF 
22SAN_214117300..18607 [-], 1308transposase, ISL3 family
23carB18767..20407 [-], 1641carbamoyl-phosphate synthase, large subunit
24SAN_214320436..20828 [-], 393mercuric resistance operon regulatory protein MerR
25SAN_214421534..23102 [+], 1569Mn2+/Fe2+ transporter, NRAMP family
26SAN_214523670..24392 [-], 723membrane protein, putative
27SAN_214624396..25013 [-], 618ABC transporter, ATP-binding protein
28SAN_214725071..25229 [-], 159conserved hypothetical protein
29SAN_214825289..26038 [-], 750Sterol-regulatory element binding protein (SREBP) site 2 protease family
30SAN_214925998..26945 [-], 948radical SAM domain protein protein
31SAN_215027517..27822 [-], 306Unknown
32SAN_215127806..28207 [-], 402Unknown
33SAN_215228195..29412 [-], 1218Unknown
34SAN_215329449..29835 [-], 387protein of unknown function, putative
35SAN_215430006..30515 [-], 510Unknown
36SAN_215530517..30849 [-], 333Unknown
37SAN_215631109..31462 [-], 354Unknown
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature