ICEberg
I. Information of ICE
ICEberg ID67
Name Tn6000 (EfcTn1This ICE is derived from experimental literature
FamilyUnclassified
OrganismEnterococcus casseliflavus 664.1H1
Size (bp)33262
GC content [Genome] (%)34.69
Insertion siteribosomal L31 gene
FunctionTetracycline resistance
Species that ICE can be transferred toEnterococcus faecium
Nucleotide SequenceFN555436 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..33262 
Putative oriT region -
Putative relaxase coordinates: 10212..11195;   Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of Tn6000 (EfcTn1) is not available.



The graph information of Tn6000 (EfcTn1) components from FN555436
Complete gene list of Tn6000 (EfcTn1) from FN555436
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-643..2055 [+], 1413hypothetical protein
2-2099..2818 [-], 720hypothetical protein
3-3081..4877 [+], 1797hypothetical protein
4-4968..6047 [+], 1080hypothetical protein
5-6269..6676 [+], 408hypothetical protein
6-6824..7138 [+], 315hypothetical protein
7-7154..7519 [+], 366hypothetical protein
8-7523..8899 [+], 1377hypothetical proteinOrf21_Tn, T4SS component 
9-8889..9173 [+], 285hypothetical protein
10-9679..9873 [+], 195hypothetical protein
11-10212..11195 [+], 984hypothetical proteinRelaxase, MOBT Family
12-11209..11430 [+], 222hypothetical proteinOrf19_Tn, T4SS component 
13-11447..11947 [+], 501hypothetical protein
14vap12081..12890 [+], 810virulence associated protein
15hel12880..16017 [+], 3138DEAD-DEAH box helicase
16-16164..16457 [+], 294hypothetical proteinOrf17_Tn, T4SS component 
17-16744..18888 [+], 2145hypothetical proteinOrf16_Tn, T4SS component 
18-18848..21136 [+], 2289hypothetical proteinOrf15_Tn, T4SS component 
19-21147..22109 [+], 963hypothetical proteinOrf14_Tn, T4SS component 
20rvt22822..24651 [+], 1830reverse transcriptase
21-24747..24812 [+], 66hypothetical proteinOrf14_Tn, T4SS component 
22-24829..25746 [+], 918hypothetical proteinOrf13_Tn, T4SS component 
23tet(S)26590..28515 [+], 1926Tet(S)AR 
24-28639..28770 [+], 132hypothetical protein
25-29284..29643 [-], 360hypothetical protein
26-30122..30622 [+], 501hypothetical protein
27-30693..30818 [+], 126hypothetical protein
28xis600031604..31879 [+], 276Xis6000 protein
29int600031979..33211 [+], 1233Int6000 proteinIntegrase 
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins29Fasta
(1) Brouwer MS; Mullany P; Roberts AP (2010). Characterization of the conjugative transposon Tn6000 from Enterococcus casseliflavus 664.1H1 (formerly Enterococcus faecium 664.1H1). FEMS Microbiol Lett. 309(1):71-6. [PudMed:20528943] experimental
(2) Roberts AP; Davis IJ; Seville L; Villedieu A; Mullany P (2006). Characterization of the ends and target site of a novel tetracycline resistance-encoding conjugative transposon from Enterococcus faecium 664.1H1. J Bacteriol. 188(12):4356-61. [PudMed:16740942] experimental
 
experimental experimental literature