ICEberg
I. Information of ICE
ICEberg ID668
Name ICE_2603_tRNALys This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus agalactiae 2603V/R
Size (bp)42898
GC content [Genome] (%)32.23[35.65]
Insertion site3' tRNAlys
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAE009948 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1962397..2005294 
Putative oriT region -
Putative relaxase coordinates: 1990885..1992174; Locus tag: SAG2017;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICE_2603_tRNALys is not available.



The graph information of ICE_2603_tRNALys components from AE009948
Complete gene list of ICE_2603_tRNALys from AE009948
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAG19721957541..1958257 [+], 717transcriptional regulator, MerR family
2SAG19731958296..1958766 [-], 471acetyltransferase, GNAT family
3SAG19741958738..1959196 [-], 459MutT/nudix family protein
4SAG19751959183..1959326 [-], 144hypothetical protein
5SAG19761959332..1959802 [-], 471conserved hypothetical protein
6SAG19771960129..1960620 [+], 492acetyltransferase, GNAT family
7SAG19781960613..1961881 [+], 1269ATPase, AAA family
8SAG19791962397..1963158 [-], 762membrane protein, putative
9SAG19801963155..1964057 [-], 903ABC transporter, ATP-binding protein
10SAG19811964054..1964260 [-], 207hypothetical protein
11SAG19821964250..1965329 [-], 1080transcriptional regulator, Cro/CI family
12SAG19831965710..1966027 [+], 318conserved hypothetical protein
13SAG19841966024..1966590 [+], 567conserved hypothetical protein TIGR00730
14SAG19851966644..1966799 [-], 156hypothetical protein
15SAG19861966825..1967952 [-], 1128site-specific recombinase, phage integrase familyIntegrase 
16SAG19871967956..1968141 [-], 186conserved hypothetical protein
17SAG19881968202..1969230 [-], 1029conserved hypothetical protein
18SAG19891969233..1969652 [-], 420hypothetical protein
19SAG19901969978..1970361 [-], 384hypothetical protein
20SAG19911970585..1971199 [+], 615transcriptional regulator, Cro/CI family
21SAG19921971372..1972928 [-], 1557protein of unknown function
22SAG19931973269..1974390 [-], 1122site-specific recombinase, phage integrase family
23SAG19941974440..1974766 [-], 327conserved hypothetical protein
24SAG19951974959..1975591 [-], 633hypothetical protein
25SAG19961975672..1976463 [-], 792cell wall surface anchor family protein, putativePrgC, T4SS component 
26SAG19971976480..1977028 [-], 549hypothetical protein
27SAG19981977028..1978401 [-], 1374hypothetical proteinPrgK, T4SS component 
28SAG19991978564..1978707 [+], 144hypothetical protein
29SAG20001978897..1980897 [-], 2001membrane protein, putativeYddG, T4SS component 
30SAG20011980913..1983183 [-], 2271conjugal transfer protein, interruption-CYddE, T4SS component 
31SAG20021983230..1983619 [-], 390IS1381, transposase OrfB
32SAG20031983652..1984035 [-], 384IS1381, transposase OrfA
33SAG20051984296..1984706 [-], 411conserved hypothetical proteinYddD, T4SS component 
34SAG20061984717..1984983 [-], 267conserved hypothetical protein
35SAG20071985004..1985957 [-], 954conserved hypothetical proteinYddB, T4SS component 
36SAG20081986010..1986264 [-], 255conserved hypothetical protein
37SAG20091986257..1986523 [-], 267conserved hypothetical protein
38SAG20101986668..1987141 [-], 474hypothetical protein
39SAG20111987149..1987631 [-], 483conserved hypothetical protein
40SAG20121987684..1987956 [-], 273hypothetical protein
41SAG20131988091..1988660 [-], 570hypothetical protein
42SAG20141988663..1990012 [-], 1350hypothetical protein
43SAG20151990209..1990508 [-], 300transcriptional regulator, Cro/CI family
44SAG20161990492..1990869 [-], 378hypothetical protein
45SAG20171990885..1992174 [-], 1290transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
46SAG20181992405..1994066 [-], 1662FtsK/SpoIIIE family proteinYdcQ, T4SS component 
47SAG20191994143..1994604 [-], 462hypothetical protein
48SAG20201994626..1994922 [-], 297hypothetical protein
49SAG20211994982..1997462 [-], 2481cell wall surface anchor family proteinPrgB, T4SS component 
50SAG20221997467..1998720 [-], 1254transposase, ISL3 family
51merA-21998880..2000520 [-], 1641mercuric reductase
52merR-22000549..2000941 [-], 393mercuric resistance operon regulatory protein MerR
53SAG20252001647..2003215 [+], 1569Mn2+/Fe2+ transporter, NRAMP family
54SAG20262003783..2004505 [-], 723membrane protein, putative
55SAG20272004509..2005126 [-], 618ABC transporter, ATP-binding protein
56SAG20282005184..2005294 [-], 111conserved hypothetical protein
57SAG20292005813..2006667 [-], 855streptomycin resistance protein
58SAG20302006846..2007238 [-], 393hypothetical protein
59SAG20312007673..2008281 [-], 609hypothetical protein
60SAG20322008268..2008603 [-], 336conserved hypothetical protein
61SAG20332009125..2009613 [-], 489acetyltransferase, GNAT family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins49Fasta
(1) Ambroset C; Coluzzi C; Guedon G; Devignes MD; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2015). New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration. Front Microbiol. 1.279861111. [PudMed:26779141] in_silico
(2) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature