ICEberg
I. Information of ICE
ICEberg ID667
Name ICE_18RS21_tRNALys This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus agalactiae 18RS21
Size (bp)-
GC content [Genome] (%)-
Insertion sitetRNALys
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAAJO01000111; AAJO01000216; AAJO01000250; AAJO01000211; AAJO01000171; AAJO01000087; AAJO01000061; AAJO01000042 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICE_18RS21_tRNALys is not available.



The graph information of ICE_18RS21_tRNALys components from AAJO01000111
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000111
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_1893297..788 [+], 492acetyl transferase
2SAJ_1894781..2049 [+], 1269ATPase, AAA family
3SAJ_18962504..3625 [-], 1122site-specific recombinase, phage integrase familyIntegrase 
4SAJ_18973675..4001 [-], 327Domain of unknown function (DUF771) superfamily
5SAJ_18984194..4826 [-], 633conserved hypothetical protein
6SAJ_18994907..5698 [-], 792cell surface protein APrgC, T4SS component 
7SAJ_19005715..5912 [-], 198conserved hypothetical protein


The graph information of ICE_18RS21_tRNALys components from AAJO01000216
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000216
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_1901141..1408 [+], 1268CHAP domain superfamily


The graph information of ICE_18RS21_tRNALys components from AAJO01000250
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000250
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_190313..1086 [+], 1074membrane protein, putativeYddG, T4SS component 


The graph information of ICE_18RS21_tRNALys components from AAJO01000211
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000211
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_190426..1420 [+], 1395conjugal transfer protein, interruption-CYddE, T4SS component 


The graph information of ICE_18RS21_tRNALys components from AAJO01000171
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000171
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_190860..980 [+], 921conserved hypothetical proteinYddB, T4SS component 
2SAJ_19071001..1267 [+], 267conserved hypothetical protein
3SAJ_19061278..1688 [+], 411conserved hypothetical proteinYddD, T4SS component 
4SAJ_19051709..2337 [+], 629conjugal transfer protein, interruption-CYddE, T4SS component 


The graph information of ICE_18RS21_tRNALys components from AAJO01000087
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000087
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_19091..509 [-], 509conserved hypothetical protein
2SAJ_1910512..1861 [-], 1350Transporter
3SAJ_19112058..2357 [-], 300transcriptional regulator, Cro/CI family
4SAJ_19122341..2718 [-], 378conserved hypothetical protein
5SAJ_19132734..3966 [-], 1233transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
6SAJ_19144200..5339 [-], 1140site-specific recombinase, phage integrase familyIntegrase 
7SAJ_19155326..5529 [-], 204conserved hypothetical protein
8repE5526..6518 [-], 993replication protein
9SAJ_19176745..6927 [-], 183hypothetical protein
10SAJ_19187176..7469 [+], 294transcription regulator


The graph information of ICE_18RS21_tRNALys components from AAJO01000061
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000061
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1merA1..1205 [+], 1205mercuric reductase
2SAJ_19201787..3448 [-], 1662FtsK/SpoIIIE family proteinYdcQ, T4SS component 
3SAJ_19213525..3782 [-], 258Macrophage colony stimulating factor I receptor precursor (CSF-1-R)(EC 2.7.1.112) (Fms proto-oncogene) (c-fms)
4SAJ_19223769..3981 [-], 213conserved hypothetical protein
5SAJ_19234003..4299 [-], 297conserved hypothetical protein
6SAJ_19244359..6866 [-], 2508cell wall surface anchor family proteinPrgB, T4SS component 
7SAJ_19256844..8097 [-], 1254transposase, ISL3 family
8merA8257..9897 [-], 1641mercuric reductase
9merR9926..10318 [-], 393Hg(II)-responsive transcriptional regulator
10SAJ_192811024..11272 [+], 249Mn2+/Fe2+ transporter, NRAMP family


The graph information of ICE_18RS21_tRNALys components from AAJO01000042
Incomplete gene list of ICE_18RS21_tRNALys from AAJO01000042
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_1929415..1983 [+], 1569Mn2+/Fe2+ transporter, NRAMP family
2SAJ_19302551..3273 [-], 723membrane protein, putative
3SAJ_19313277..3894 [-], 618ABC transporter (ATP-binding protein)-like protein yydI
4str4581..5435 [-], 855Aminoglycoside 6-adenylyltransferase
5SAJ_19336441..7049 [-], 609conserved hypothetical protein
6SAJ_19347036..7371 [-], 336Transcriptional regulator, PadR family
7SAJ_19357893..8444 [-], 552acetyltransferase, GNAT family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature