ICEberg
I. Information of ICE
ICEberg ID666
Name ICE_18RS21_rplL This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus agalactiae 18RS21
Size (bp)-
GC content [Genome] (%)-
Insertion siterplL
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAAJO01000013; AAJO01000011 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICE_18RS21_rplL is not available.



The graph information of ICE_18RS21_rplL components from AAJO01000013
Incomplete gene list of ICE_18RS21_rplL from AAJO01000013
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_12631..245 [+], 245transposase
2SAJ_1264564..854 [+], 291transposase
3orfB890..1423 [+], 534ISSdy1, transposase OrfB
4SAJ_12661775..2158 [+], 384degenerate transposase
5SAJ_12672191..2580 [+], 390Transposase (IS4 family)
6SAJ_12682667..3902 [+], 1236conserved hypothetical protein
7SAJ_12694097..5296 [-], 1200site-specific recombinase, phage integrase familyIntegrase 
8SAJ_12705319..5546 [-], 228conserved hypothetical protein
9SAJ_12715825..6049 [-], 225transcriptional regulator, Cro/CI family
10SAJ_12726230..8095 [-], 1866Tn5252, relaxaseRelaxase, MOBP Family
11SAJ_12738082..8309 [-], 228Tn5252, Orf 9 protein
12SAJ_12748671..8832 [-], 162Tn5252, Orf 10 protein
13SAJ_12759156..9263 [+], 108hypothetical protein
14SAJ_12769324..9806 [+], 483hypothetical protein
15SAJ_127710263..11330 [-], 1068cation-transporting ATPase, E1-E2 family
16SAJ_127811239..12396 [-], 1158cation-transporting ATPase, E1-E2 family
17SAJ_127912389..12757 [-], 369cadmium efflux system accessory protein
18SAJ_128013313..14101 [-], 789conserved hypothetical protein
19SAJ_128114110..14706 [+], 597integral membrane protein TIGR01906
20SAJ_128214880..16388 [-], 1509copper-translocating P-type ATPase
21copB16438..16974 [-], 537cation-transporting ATPase, E1-E2 family
22pacS17113..17319 [-], 207copper-translocating P-type ATPase
23SAJ_128517467..17850 [-], 384copper-translocating P-type ATPase
24SAJ_128618063..18380 [-], 318transcriptional repressor CopY
25SAJ_128719056..19430 [-], 375CadD
26SAJ_128819969..20427 [+], 459conserved hypothetical protein
27SAJ_128920971..21663 [+], 693phage repressor protein
28SAJ_129021666..21800 [+], 135conserved hypothetical protein
29SAJ_129121806..23221 [+], 1416ImpB/MucB/SamB family protein
30SAJ_129223218..23568 [+], 351conserved hypothetical protein
31SAJ_129324218..24607 [-], 390conserved hypothetical protein
32SAJ_129424604..24831 [-], 228conserved hypothetical protein
33SAJ_129524885..25513 [-], 629conserved hypothetical protein


The graph information of ICE_18RS21_rplL components from AAJO01000011
Incomplete gene list of ICE_18RS21_rplL from AAJO01000011
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAJ_12961..6814 [-], 6814SNF2 family protein
2SAJ_12976863..7414 [-], 552conserved hypothetical protein
3SAJ_12987398..7589 [-], 192calcium-binding protein-like
4SAJ_12997590..12485 [-], 4896agglutinin receptorPrgB, T4SS component 
5SAJ_130012764..13354 [+], 591abortive infection protein AbiGI
6SAJ_130113351..14196 [+], 846abortive infection protein AbiGII
7SAJ_130214282..17083 [-], 2802Tn5252, Orf28PrgK, T4SS component 
8traE17085..19415 [-], 2331Tn5252, Orf26PrgJ, T4SS component 
9SAJ_130419808..20662 [-], 855Tn5252, Orf23
10SAJ_130520681..20923 [-], 243conserved hypothetical protein
11traK20941..22758 [-], 1818TraG family proteinT4CP 
12SAJ_130722758..23246 [-], 489conserved hypothetical protein
13SAJ_130823323..23907 [-], 585protease, putative
14SAJ_130923910..24143 [-], 234conserved hypothetical protein
15SAJ_131024959..26314 [-], 1356C-5 cytosine-specific DNA methylase
16SAJ_131126366..26461 [-], 96hypothetical protein
17SAJ_131226463..27281 [-], 819IFN-response binding factor 1 (IREBF-1)
18SAJ_131327278..27451 [-], 174conserved hypothetical protein
19rplL27650..28015 [-], 366ribosomal protein L7/L12
20SAJ_131528079..28174 [-], 9650S ribosomal protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature