ICEberg
I. Information of ICE
ICEberg ID63
Name CTn86 This ICE is derived from experimental literature
FamilyUnclassified
OrganismBacteroides fragilis 86-5443-2-2
Size (bp)-
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred toBacteroides fragilis
Nucleotide SequenceAY372755; AY375536 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of CTn86 is not available.



The graph information of CTn86 components from AY372755
Incomplete gene list of CTn86 from AY372755
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1per302..1915 [+], 1614ABC transporter permease protein
2tnpB1871..2713 [-], 843TnpB
3tnpA12682..4241 [-], 1560TnpA1Integrase 
4-5152..6096 [-], 945unknown
5bfmA7727..8269 [+], 543BfmA
6bfmB8259..9209 [+], 951BfmB
7-9470..9847 [+], 378unknown
8bft10117..11286 [-], 1170Bft
9mpII12998..14188 [+], 1191MpII
10bfmC15246..16850 [-], 1605BfmCT4CP 
11-16929..17282 [-], 354unknown
12-17293..20040 [-], 2748unknown
13-20037..20957 [-], 921unknown
14-21045..22352 [-], 1308unknown
15-22358..22762 [-], 405unknown
16-23329..23889 [+], 561RNA polymerase ECF-type sigma factor


The graph information of CTn86 components from AY375536
Incomplete gene list of CTn86 from AY375536
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-259..702 [-], 444ORF-58A
2-890..1501 [-], 612ORF-58B
3-1540..2037 [-], 498ORF-59
4-2956..3273 [-], 318ORF-60
5tnpA24052..4426 [-], 375TnpA2
6bexB4599..5963 [-], 1365putative Na+-driven multidrug efflux pump
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Franco AA (2004). The Bacteroides fragilis pathogenicity island is contained in a putative novel conjugative transposon. J Bacteriol. 186(18):6077-92. [PudMed:15342577] experimental
 
experimental experimental literature