ICEberg
I. Information of ICE
ICEberg ID55
Name ICEAciJS42-1 This is a putative ICE identified in this study by Blast
FamilyICEclc
OrganismAcidovorax sp. JS42
Size (bp)119898
GC content [Genome] (%)65.22[66.17]
Insertion sitetRNA-Gly(Ajs_R0015)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000539 (complete ICE sequence in this genome)
Replicon chromosome (4448856 bp, BioProject:15685) [NC_008782]
Genome coordinates1287924..1407821 
Putative oriT region -
Putative relaxase coordinates: 1323801..1325684; Locus tag: Ajs_1245;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEAciJS42-1 is not available.



The graph information of ICEAciJS42-1 components from CP000539
Complete gene list of ICEAciJS42-1 from CP000539
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Ajs_12091283219..1283827 [+], 609ATP-dependent Clp protease proteolytic subunit ClpP
2Ajs_12101283925..1285190 [+], 1266ATP-dependent Clp protease, ATP-binding subunit ClpX
3Ajs_12111285330..1287750 [+], 2421ATP-dependent proteinase
4Ajs_12131288148..1289383 [+], 1236phage integrase family protein
5Ajs_12141289444..1290976 [+], 1533Integrase, catalytic region
6Ajs_12151290966..1291787 [+], 822IstB domain protein ATP-binding proteinTrbB, T4SS component 
7Ajs_12161291835..1292470 [+], 636IstB domain protein ATP-binding proteinTrbB, T4SS component 
8Ajs_12191294231..1295220 [+], 990transcriptional regulator, AraC family with amidase-like domain
9Ajs_12201295245..1295880 [-], 636transcriptional regulator, LysR family
10Ajs_12211296054..1296671 [+], 618conserved hypothetical protein
11Ajs_12221296668..1298338 [+], 1671Integrase, catalytic region
12Ajs_12231298335..1299231 [+], 897TniB family protein
13Ajs_12241299303..1300721 [+], 1419hypothetical protein
14Ajs_12251301445..1302671 [+], 1227transposase IS116/IS110/IS902 family protein
15Ajs_12261302933..1304159 [+], 1227transposase, IS204/IS1001/IS1096/IS1165 family protein
16Ajs_12291305583..1306485 [-], 903transcriptional regulator, LysR family
17Ajs_12301306498..1307586 [-], 1089transposase, IS4 family
18Ajs_12311307658..1307798 [-], 141conserved hypothetical protein
19Ajs_12321308007..1311126 [-], 3120heavy metal efflux pump, CzcA family
20Ajs_12341311369..1312349 [-], 981copper resistance B precursor
21Ajs_12351312375..1314267 [-], 1893copper-resistance protein, CopA family
22Ajs_12361314511..1315170 [+], 660two component heavy metal response transcriptional regulator, winged helix family
23Ajs_12381315520..1316680 [-], 1161Integrase, catalytic region
24Ajs_12391316791..1317159 [+], 369integrase, catalytic region
25Ajs_12401317323..1319257 [-], 1935iron permease FTR1
26Ajs_12411319385..1319819 [-], 435transcriptional regulator, MerR family
27Ajs_12421319914..1322313 [+], 2400heavy metal translocating P-type ATPase
28Ajs_12431322310..1323404 [+], 1095signal peptidase II
29Ajs_12451323801..1325684 [-], 1884RelaxaseRelaxase, MOBH Family
30Ajs_12461325914..1326300 [+], 387transcriptional regulator, AbrB family
31Ajs_12471326300..1326758 [+], 459conserved hypothetical protein
32Ajs_12481326785..1327162 [+], 378conserved hypothetical protein
33Ajs_12491327178..1328695 [-], 1518conserved hypothetical proteinTfc19, T4SS component 
34Ajs_12501328710..1329069 [-], 360conserved hypothetical protein
35Ajs_12511329066..1330460 [-], 1395conserved hypothetical proteinTfc22, T4SS component 
36Ajs_12521330470..1331417 [-], 948protein of unknown function DUF1527Tfc23, T4SS component 
37Ajs_12531331414..1331860 [-], 447protein of unknown function DUF1525Tfc24, T4SS component 
38Ajs_12541332024..1332518 [-], 495DNA repair protein RadC
39Ajs_12551332698..1333462 [-], 765conserved hypothetical protein
40Ajs_12561333487..1336378 [-], 2892conserved hypothetical proteinTfc16, T4SS component 
41Ajs_12571336378..1336827 [-], 450putative secreted proteinTfc15, T4SS component 
42Ajs_12581336808..1338238 [-], 1431putative secreted proteinTfc14, T4SS component 
43Ajs_12591338228..1339136 [-], 909putative secreted proteinTfc13, T4SS component 
44Ajs_12601339133..1339825 [-], 693putative secreted proteinTfc12, T4SS component 
45Ajs_12611339822..1340220 [-], 399conserved hypothetical proteinTfc11, T4SS component 
46Ajs_12621340232..1340591 [-], 360conserved hypothetical proteinTfc10, T4SS component 
47Ajs_12631340608..1340841 [-], 234conserved hypothetical protein
48Ajs_12641340838..1341221 [-], 384plasmid conserved hypothetical protein, RAQPRDTfc9, T4SS component 
49Ajs_12651341425..1341895 [+], 471DNA binding domain, excisionase family
50Ajs_12661341892..1342467 [+], 576conserved hypothetical protein
51Ajs_12671342485..1343399 [+], 915AAA ATPase, central domain protein
52Ajs_12681343396..1343866 [+], 471conserved hypothetical protein
53Ajs_12691343863..1344363 [+], 501conserved hypothetical protein
54Ajs_12701344363..1345265 [+], 903conserved hypothetical protein
55Ajs_12711345304..1346029 [+], 726conserved hypothetical protein
56Ajs_12721346039..1348663 [+], 2625conserved hypothetical protein
57Ajs_12731348704..1349453 [-], 750conserved hypothetical proteinTfc8, T4SS component 
58Ajs_12741349450..1351642 [-], 2193conserved hypothetical proteinTfc6, T4SS component 
59Ajs_12751351647..1352195 [-], 549putative secreted proteinTfc5, T4SS component 
60Ajs_12761352192..1352782 [-], 591Lytic transglycosylase, catalyticTfc4, T4SS component 
61Ajs_12771352764..1353489 [-], 726putative secreted proteinTfc3, T4SS component 
62Ajs_12781353506..1354141 [-], 636conserved hypothetical proteinTfc2, T4SS component 
63Ajs_12791354138..1354704 [-], 567putative secreted proteinTfc2, T4SS component 
64Ajs_12801354831..1355193 [+], 363transcriptional regulator, ArsR family
65Ajs_12811355196..1355690 [+], 495protein tyrosine phosphatase
66Ajs_12821355701..1356777 [+], 1077arsenical-resistance protein
67Ajs_12831356794..1357216 [+], 423arsenate reductase
68Ajs_12841357200..1357931 [+], 732NADPH-dependent FMN reductase
69Ajs_12851357990..1360269 [-], 2280helicase domain protein
70Ajs_12861360406..1360711 [-], 306conserved hypothetical protein
71Ajs_12871360801..1361121 [-], 321conserved hypothetical protein
72Ajs_12881361173..1362321 [-], 1149conserved hypothetical protein
73Ajs_12891362347..1362994 [-], 648conserved hypothetical protein
74Ajs_12901363071..1363331 [-], 261conserved hypothetical protein
75Ajs_12911363348..1363755 [-], 408conserved hypothetical protein
76Ajs_12921363856..1364179 [-], 324conserved hypothetical protein
77Ajs_12931364272..1364961 [-], 690conserved hypothetical protein
78Ajs_12941365018..1365947 [-], 930conserved hypothetical protein
79Ajs_12961366850..1367110 [-], 261conserved hypothetical protein
80Ajs_12981368196..1369884 [-], 1689mercuric reductase
81Ajs_12991369895..1370182 [-], 288mercuric transport protein periplasmic component
82Ajs_13001370195..1370545 [-], 351Mercuric transport protein MerT
83Ajs_13011370617..1371024 [+], 408putative transcriptional regulator, MerR family
84Ajs_13021371286..1372110 [-], 825conserved hypothetical protein
85Ajs_13031372399..1372677 [-], 279conserved hypothetical protein
86Ajs_13041372775..1373512 [-], 738conserved hypothetical protein
87Ajs_13051373596..1374282 [-], 687conserved hypothetical protein
88Ajs_13061374465..1374857 [-], 393conserved hypothetical protein
89Ajs_13081375434..1376192 [-], 759conserved hypothetical protein
90Ajs_13091376235..1377854 [-], 1620C-5 cytosine-specific DNA methylase
91Ajs_13111378380..1380392 [-], 2013DNA topoisomerase III
92Ajs_13121380669..1381121 [-], 453single-strand binding protein/Primosomal replication protein n
93Ajs_13131381195..1381722 [-], 528putative integrase regulator R protein
94Ajs_13141381719..1382513 [-], 795conserved hypothetical protein
95Ajs_13151382944..1384179 [-], 1236conserved hypothetical protein
96Ajs_13161384182..1384742 [-], 561conserved hypothetical protein
97Ajs_13171384757..1386436 [-], 1680conserved hypothetical protein
98Ajs_13181386429..1386698 [-], 270conserved hypothetical protein
99Ajs_13191386682..1387557 [-], 876Cobyrinic acid a,c-diamide synthase
100Ajs_13201387600..1387812 [-], 213phage transcriptional regulator, AlpA
101Ajs_13211387931..1388677 [-], 747conserved hypothetical protein
102Ajs_13221389128..1389628 [+], 501protein of unknown function DUF305
103Ajs_13231389767..1392736 [+], 2970transposase Tn3 family protein
104Ajs_13241392822..1393073 [+], 252putative transcriptional regulator, CopG/Arc/MetJ family
105Ajs_13261393644..1393961 [-], 318protein of unknown function UPF0060
106Ajs_13271393966..1394502 [-], 537hypothetical protein
107Ajs_13281394508..1394894 [-], 387conserved hypothetical protein
108Ajs_13291394934..1398053 [-], 3120heavy metal efflux pump, CzcA family
109Ajs_13301398055..1399173 [-], 1119conserved hypothetical protein
110Ajs_13311399170..1399730 [-], 561conserved hypothetical protein
111Ajs_13321399789..1401114 [-], 1326outer membrane efflux protein
112Ajs_13331401279..1401641 [-], 363conserved hypothetical protein
113Ajs_13341401705..1402415 [-], 711conserved hypothetical protein
114Ajs_13351402423..1404684 [-], 2262heavy metal translocating P-type ATPase
115Ajs_13361404762..1405202 [+], 441putative transcriptional regulator, MerR family
116Ajs_13371405501..1407198 [+], 1698phage integrase family proteinIntegrase 
117Ajs_13381407237..1407821 [+], 585conserved hypothetical protein
118Ajs_13401408940..1410403 [+], 1464phage integrase family protein
119Ajs_13411410398..1411162 [-], 765IstB domain protein ATP-binding protein
120Ajs_13421411159..1412754 [-], 1596Integrase, catalytic region
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins114Fasta
Identified as part of this study from CP000539