ICEberg
I. Information of ICE
ICEberg ID546
Name pSAM3 {AICE} This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptomyces ambofaciens DSM
Size (bp)18,965
GC content [Genome] (%)65.23
Insertion sitetRNA-Arg(SAM40697_tRNA54, from positions 5244106 to 5244180).
Function-
Species that ICE can be transferred toStreptomyces ambofaciens ATCC 23877; Streptomyces lividans TK23
Nucleotide SequenceCP012949 (complete ICE sequence in this genome)
Replicon-
Genome coordinates5225368..5244106 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of pSAM3 {AICE} is not available.



The graph information of pSAM3 {AICE} components from CP012949
Complete gene list of pSAM3 {AICE} from CP012949
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAM40697_45925220369..5221529 [-], 1161protein in whiE locus
2SAM40697_45935222034..5224004 [+], 1971polyketide hydroxylase
3SAM40697_45945224098..5224970 [+], 873patatin
4SAM40697_45955225368..5226036 [-], 669hypothetical protein
5SAM40697_45965226062..5226499 [-], 438hypothetical protein
6SAM40697_45975227053..5227382 [+], 330hypothetical protein
7SAM40697_45985227510..5227782 [-], 273hypothetical protein
8SAM40697_45995227813..5228097 [-], 285hypothetical protein
9SAM40697_46005228379..5229185 [-], 807hypothetical protein
10SAM40697_46015230358..5230558 [+], 201hypothetical protein
11SAM40697_46025230646..5233879 [+], 3234hypothetical protein
12SAM40697_46035234426..5235142 [+], 717hypothetical protein
13SAM40697_46045235230..5235628 [+], 399hypothetical protein
14SAM40697_46055235807..5236658 [+], 852RNA polymerase subunit sigma-24
15SAM40697_46065236655..5237476 [+], 822integrase
16SAM40697_46075237659..5238006 [+], 348hypothetical protein
17SAM40697_46085238013..5239383 [+], 1371conjugal transfer protein TraSTcpA, T4SS component 
18SAM40697_46095239472..5240158 [+], 687SpdA protein
19SAM40697_46105240174..5240353 [+], 180Mobile element transfer
20SAM40697_46115240542..5240847 [+], 306SpdD protein
21SAM40697_46125240953..5242317 [+], 1365replication initiation proteinReplication protein 
22SAM40697_46135242317..5242487 [+], 171excisionase
23SAM40697_46145242484..5243887 [+], 1404integraseIntegrase 
24SAM40697_46155244371..5244835 [+], 465hypothetical protein
25SAM40697_46165245137..5246174 [+], 1038hypothetical protein
26SAM40697_46175246193..5247584 [+], 1392diaminopimelate decarboxylase
27SAM40697_46185247738..5249030 [+], 1293homoserine dehydrogenase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins20Fasta
(1) Thibessard A; Leblond P (2016). Complete Genome Sequence of Streptomyces ambofaciens DSM 40697, a Paradigm for Genome Plasticity Studies. Genome Announc. 4(3). [PudMed:27257195]