ICEberg
I. Information of ICE
ICEberg ID53
Name ICEHaeULPAs1-1 This is a putative ICE identified in this study by Blast
FamilyICEclc
OrganismHerminiimonas arsenicoxydans
Size (bp)88118
GC content [Genome] (%)62.85[54.29]
Insertion sitetRNA-Gly(HEARtRNA30)
FunctionArsenic resistance
Species that ICE can be transferred to-
Nucleotide SequenceCU207211 (complete ICE sequence in this genome)
Replicon chromosome (3424307 bp, BioProject:13467) [NC_009138]
Genome coordinates1978021..2066138 
Putative oriT region -
Putative relaxase coordinates: 2037564..2039408; Locus tag: HEAR2031;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEHaeULPAs1-1 is not available.



The graph information of ICEHaeULPAs1-1 components from CU207211
Complete gene list of ICEHaeULPAs1-1 from CU207211
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1HEAR19541974148..1974927 [+], 780Enoyl-CoA hydratase/isomerase
2HEAR19551974935..1975639 [+], 705Putative phosphoglycerate mutase
3HEAR19561975765..1976457 [+], 693Glutathione S-transferase
4HEAR19571976515..1976970 [-], 456putative acyl dehydratase
5HEAR19581976987..1977409 [-], 423Conserved hypothetical protein
6arsH31978021..1978743 [-], 723NADPH-dependent FMN reductase, ArsH-like
7arsC3a1978736..1979158 [-], 423arsenate reductase
8HEAR19611979155..1980387 [-], 1233Putative permease of the major facilitator superfamily
9acr31980390..1981460 [-], 1071Arsenite efflux pump ACR3
10arsC3b1981471..1981965 [-], 495Arsenate reductase
11arsR31981970..1982293 [-], 324Arsenical resistance transcriptional regulator, arsR
12HEAR19671983019..1983765 [+], 747Conserved hypothetical protein
13HEAR19681983875..1984096 [+], 222Putative prophage CP4-57 regulatory protein
14HEAR19691984139..1985014 [+], 876Conserved hypothetical protein
15HEAR19701984998..1985258 [+], 261Conserved hypothetical protein
16HEAR19711985251..1986915 [+], 1665Putative transcriptional regulator
17HEAR19721986931..1987491 [+], 561Conserved hypothetical protein
18HEAR19731987495..1988745 [+], 1251Conserved hypothetical protein
19HEAR19741989077..1989856 [+], 780Conserved hypothetical protein
20HEAR19761989853..1990380 [+], 528Putative integrase regulator R, partial
21HEAR19771990454..1990894 [+], 441Putative single-stranded DNA binding protein
22topB1991174..1993195 [+], 2022DNA topoisomerase 3 (DNA topoisomerase III)
23HEAR19801994118..1994330 [+], 213Conserved hypothetical protein
24HEAR19821994352..1994744 [+], 393Conserved hypothetical protein
25HEAR19831994959..1995696 [+], 738Conserved hypothetical protein
26HEAR19851995793..1996071 [+], 279Conserved hypothetical protein
27HEAR19861996192..1997346 [+], 1155Conserved hypothetical protein
28HEAR19871997499..1998326 [+], 828Conserved hypothetical protein
29HEAR19881998422..1999111 [+], 690Conserved hypothetical protein
30HEAR19891999206..1999547 [+], 342Conserved hypothetical protein
31HEAR19901999652..2000059 [+], 408Conserved hypothetical protein
32HEAR19912000076..2000336 [+], 261Conserved hypothetical protein
33HEAR19922000413..2001063 [+], 651Conserved hypothetical protein
34HEAR19932001128..2002237 [+], 1110Conserved hypothetical protein
35HEAR19942002288..2002608 [+], 321Conserved hypothetical protein
36HEAR19952002698..2003003 [+], 306Conserved hypothetical protein
37HEAR19962003141..2005420 [+], 2280Conserved hypothetical protein, putative helicase
38HEAR19972005559..2006338 [+], 780Conserved hypothetical protein, putative competence protein
39HEAR19982006405..2008171 [-], 1767putative DNA helicase II
40HEAR19992008206..2009990 [-], 1785Conserved hypothetical protein, putative ATP-dependent endonuclease
41HEAR20002010192..2010812 [+], 621Conserved hypothetical proteinTfc2, T4SS component 
42HEAR20012010809..2011459 [+], 651Conserved hypothetical proteinTfc2, T4SS component 
43HEAR20022011474..2012199 [+], 726Conserved hypothetical protein; putative exported proteinTfc3, T4SS component 
44HEAR20032012181..2012771 [+], 591Conserved hypothetical protein, putative lytic transglycolaseTfc4, T4SS component 
45HEAR20042012768..2013316 [+], 549Conserved hypothetical protein; putative exported proteinTfc5, T4SS component 
46HEAR20052013321..2015507 [+], 2187Conserved hypothetical protein, putative ATPase domainTfc6, T4SS component 
47HEAR20062015504..2016253 [+], 750Conserved hypothetical protein; putative membrane proteinTfc8, T4SS component 
48HEAR20072016283..2018907 [-], 2625Conserved hypothetical protein, putative ATPase involved in DNA repair
49HEAR20082019008..2020060 [-], 1053Conserved hypothetical protein
50HEAR20102020212..2020886 [-], 675Conserved hypothetical protein
51HEAR20112020949..2021893 [+], 945Conserved hypothetical protein
52HEAR20122022030..2022410 [+], 381Conserved hypothetical protein; putative exported proteinTfc9, T4SS component 
53HEAR20132022407..2022640 [+], 234Conserved hypothetical protein; putative membrane protein
54HEAR20142022657..2023016 [+], 360Conserved hypothetical protein; putative exported or membrane proteinTfc10, T4SS component 
55HEAR20152023029..2023439 [+], 411Conserved hypothetical protein; putative membrane proteinTfc11, T4SS component 
56HEAR20162023436..2024125 [+], 690Conserved hypothetical proteinTfc12, T4SS component 
57HEAR20172024122..2025039 [+], 918Conserved hypothetical protein; putative exported proteinTfc13, T4SS component 
58HEAR20182025029..2026459 [+], 1431Conserved hypothetical proteinTfc14, T4SS component 
59HEAR20192026440..2026880 [+], 441Conserved hypothetical protein; putative exported proteinTfc15, T4SS component 
60HEAR20202026880..2029762 [+], 2883Conserved hypothetical proteinTfc16, T4SS component 
61HEAR20212029776..2030540 [+], 765Conserved hypothetical protein, putative disulfide isomerase
62HEAR20222030725..2031219 [+], 495putative DNA repair protein RadC
63HEAR20232031378..2031824 [+], 447Conserved hypothetical proteinTfc24, T4SS component 
64HEAR20242031821..2032768 [+], 948Conserved hypothetical proteinTfc23, T4SS component 
65HEAR20252032778..2034175 [+], 1398Conserved hypothetical protein; putative exported proteinTfc22, T4SS component 
66HEAR20262034172..2034531 [+], 360Conserved hypothetical protein; putative exported protein
67HEAR20272034547..2036064 [+], 1518Conserved hypothetical protein; putative membrane proteinTfc19, T4SS component 
68HEAR20282036078..2036455 [-], 378Conserved hypothetical protein; putative exported protein
69HEAR20292036483..2036941 [-], 459Conserved hypothetical protein
70HEAR20302036941..2037258 [-], 318Conserved hypothetical protein, putative transcriptional regulator
71HEAR20312037564..2039408 [+], 1845Conserved hypothetical protein, putative relaxaseRelaxase, MOBH Family
72uvrA12039488..2042139 [-], 2652UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
73HEAR20332042165..2044030 [-], 1866putative Na+/H+ antiporter fused with thioredoxin domain
74HEAR20342044085..2045398 [-], 1314ATPase, AAA family protein
75HEAR20352045450..2046757 [-], 1308NADH dehydrogenase
76frmB2046774..2047604 [-], 831S-formylglutathione hydrolase
77HEAR20372047663..2048997 [-], 1335Conserved hypothetical protein; putative membrane protein
78HEAR20382049180..2049578 [-], 399Conserved hypothetical protein
79HEAR20392049622..2050731 [-], 1110Alcohol dehydrogenase class-3 (Alcohol dehydrogenase class-III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH)
80frmR2050791..2051066 [-], 276repressor FrmR
81HEAR20412051349..2052239 [-], 891Putative nitrilase (nthA-like)
82HEAR20422052236..2052844 [-], 609Conserved hypothetical protein, putative N-acetyltransferase
83HEAR20432052846..2053253 [-], 408Conserved hypothetical protein
84HEAR20442053408..2054313 [+], 906Putative transcriptional regulator, LysR family
85uvrB12054464..2056440 [-], 1977UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
86HEAR20462056815..2057246 [-], 432Conserved hypothetical protein
87HEAR20472057739..2058680 [+], 942Putative transcription regulator, LysR family
88fdhA22059147..2060361 [+], 1215Glutathione-independent formaldehyde dehydrogenase (FDH) (FALDH)
89HEAR20492060342..2060692 [+], 351Hypothetical protein
90HEAR20502060865..2061755 [+], 891putative transcriptional regulator, LysR family
91HEAR20522061939..2062844 [+], 906Putative transcriptional regulator, LysR family
92HEAR20532062951..2063931 [+], 981Conserved hypothetical protein, putative peroxidase
93int2063969..2065912 [-], 1944IntegraseIntegrase 
94pgsA2066278..2066865 [-], 588CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase)
95uvrC12066934..2068790 [-], 1857UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
96nagZ2068832..2069905 [-], 1074Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase)
97acpS2069902..2070294 [-], 393holo-[acyl-carrier-protein] synthase (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase)
98pdxJ2070291..2071058 [-], 768Pyridoxine 5'-phosphate synthase (PNP synthase)
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins87Fasta
Identified as part of this study from CU207211