ICEberg
I. Information of ICE
ICEberg ID51
Name ICEXcaCa8004-1 This is a putative ICE identified in this study by Blast
FamilyICEclc
OrganismXanthomonas campestris pv. campestris str. 8004
Size (bp)98945
GC content [Genome] (%)60.48[64.96]
Insertion sitetRNA-Gly(XC_4353)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000050 (complete ICE sequence in this genome)
Replicon chromosome (5148708 bp, BioProject:15) [NC_007086]
Genome coordinates2414505..2513449 
Putative oriT region -
Putative relaxase coordinates: 2435115..2437043; Locus tag: XC_2020;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEXcaCa8004-1 is not available.



The graph information of ICEXcaCa8004-1 components from CP000050
Complete gene list of ICEXcaCa8004-1 from CP000050
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1XC_19982409643..2410107 [+], 465low molecular weight phosphotyrosine protein phosphatase
2XC_19992410050..2411549 [+], 1500conserved hypothetical protein
3XC_20002411546..2413402 [+], 1857excinuclease ABC subunit C
4XC_20012413402..2414307 [+], 906CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
5XC_20022414668..2416605 [+], 1938phage-related integrase
6XC_20032417181..2417411 [+], 231cointegrate resolution protein T
7XC_20042417876..2418871 [+], 996avirulence protein
8XC_20052419392..2420078 [-], 687conserved hypothetical protein
9XC_20072420596..2422110 [-], 1515IS1478 transposase
10XC_20092422887..2423021 [+], 135conserved hypothetical protein
11XC_20102423107..2423379 [+], 273IS1477 transposase
12XC_20112423412..2424245 [+], 834IS1477 transposaseIntegrase 
13XC_20122424383..2425363 [+], 981IS1479 transposase
14XC_20142425925..2426644 [-], 720conserved hypothetical protein
15XC_20132426585..2428192 [+], 1608sensor kinase
16XC_20152429088..2429861 [+], 774conserved hypothetical proteinVirB5, T4SS component 
17XC_20162429893..2431035 [+], 1143VirB6 proteinVirB6, T4SS component 
18XC_20172431813..2432280 [+], 468conserved hypothetical protein
19XC_20182432277..2432936 [+], 660conserved hypothetical protein
20XC_20192432933..2434315 [+], 1383conserved hypothetical protein
21XC_20202435115..2437043 [-], 1929conserved hypothetical proteinRelaxase, MOBH Family
22XC_20212437359..2437985 [+], 627conserved hypothetical protein
23XC_20222437998..2438630 [+], 633conserved hypothetical protein
24XC_20232438716..2439081 [+], 366conserved hypothetical protein
25XC_20242439093..2440613 [-], 1521conserved hypothetical proteinTfc19, T4SS component 
26XC_20252440629..2440976 [-], 348conserved hypothetical protein
27XC_20262440973..2442367 [-], 1395conserved hypothetical proteinTfc22, T4SS component 
28XC_20272442378..2443343 [-], 966conserved hypothetical proteinTfc23, T4SS component 
29XC_20282443340..2443786 [-], 447conserved hypothetical proteinTfc24, T4SS component 
30XC_20292443947..2444441 [-], 495putative DNA repair protein RadC
31XC_20302444626..2445390 [-], 765conserved hypothetical protein
32XC_20312445406..2448270 [-], 2865Type IV secretory pathway, VirB4 componentsTfc16, T4SS component 
33XC_20322448270..2448713 [-], 444conserved hypothetical proteinTfc15, T4SS component 
34XC_20332448694..2450124 [-], 1431conserved hypothetical proteinTfc14, T4SS component 
35XC_20342450114..2450965 [-], 852conserved hypothetical proteinTfc13, T4SS component 
36XC_20352451037..2451726 [-], 690conserved hypothetical proteinTfc12, T4SS component 
37XC_20362451723..2452133 [-], 411conserved hypothetical proteinTfc11, T4SS component 
38XC_20372452144..2452461 [-], 318conserved hypothetical proteinTfc10, T4SS component 
39XC_20382452750..2453130 [-], 381conserved hypothetical proteinTfc9, T4SS component 
40XC_20392453229..2453978 [-], 750conserved hypothetical proteinTfc8, T4SS component 
41XC_20402453975..2456164 [-], 2190VirD4, Type IV secretory pathway, VirD4 componentsTfc6, T4SS component 
42XC_20412456169..2456717 [-], 549conserved hypothetical proteinTfc5, T4SS component 
43XC_20422456714..2457295 [-], 582conserved hypothetical proteinTfc4, T4SS component 
44XC_20432457301..2458023 [-], 723conserved hypothetical proteinTfc3, T4SS component 
45XC_20442458039..2458686 [-], 648conserved hypothetical proteinTfc2, T4SS component 
46XC_20452458683..2459267 [-], 585conserved hypothetical proteinTfc2, T4SS component 
47XC_20462459407..2461713 [-], 2307plasmid-related protein
48XC_20472461828..2462163 [-], 336conserved hypothetical protein
49XC_20482462222..2462404 [-], 183conserved hypothetical protein
50XC_20492462586..2463695 [-], 1110plasmid-related protein
51XC_20502463759..2464409 [-], 651conserved hypothetical protein
52XC_20512464537..2464860 [-], 324plasmid-related protein
53XC_20522464953..2465633 [-], 681conserved hypothetical protein
54XC_20532465695..2466849 [-], 1155conserved hypothetical protein
55XC_20552467945..2468385 [+], 441hypothetical protein
56XC_20562468544..2468897 [-], 354conserved hypothetical protein
57XC_20572469041..2469481 [-], 441conserved hypothetical protein
58XC_20582470152..2470358 [-], 207conserved hypothetical protein
59XC_20592470580..2471506 [-], 927conserved hypothetical protein
60XC_20602471506..2473626 [-], 2121conserved hypothetical protein
61XC_20612473868..2474260 [-], 393conserved hypothetical protein
62XC_20622474458..2474685 [-], 228conserved hypothetical protein
63XC_20632474967..2476505 [-], 1539DNA methyltransferase
64XC_20642477040..2479052 [-], 2013putative DNA topoisomerase III
65XC_20652479332..2479772 [-], 441single-stranded DNA binding protein
66XC_20662479846..2480253 [-], 408conserved hypothetical protein
67XC_20672480376..2481068 [-], 693conserved hypothetical protein
68XC_20682481453..2482679 [-], 1227conserved hypothetical protein
69XC_20692482683..2483243 [-], 561conserved hypothetical protein
70XC_20702483259..2484902 [-], 1644conserved hypothetical protein
71XC_20712485139..2486014 [-], 876chromosome partitioning related protein
72XC_20722486061..2486282 [-], 222phage-related protein
73XC_20742487505..2488134 [+], 630hypothetical protein
74XC_20752488076..2489314 [+], 1239transcriptional regulator, HTH_3 family
75XC_20782492116..2494215 [+], 2100YeeB-like protein
76XC_20792494208..2495389 [+], 1182YeeC-like protein
77XC_20802495476..2496441 [+], 966conserved hypothetical protein
78XC_20812496680..2498017 [-], 1338avirulence protein
79XC_20822498108..2498422 [-], 315avirulence protein
80XC_20842499638..2500534 [-], 897Tn5041 transposase
81XC_20852501006..2502559 [-], 1554conserved hypothetical protein
82XC_20862502709..2509179 [-], 6471DNA helicase related protein
83XC_20872509788..2511518 [-], 1731tannase precursor
84XC_20882511641..2512087 [-], 447conserved hypothetical protein
85XC_20892512750..2513025 [+], 276conserved hypothetical protein
86XC_20902513765..2515177 [+], 1413oxygen-independent coproporphyrinogen III oxidase
87XC_20912515416..2516708 [+], 1293polysaccharide biosynthetic protein
88XC_20922516692..2517945 [-], 1254conserved hypothetical protein
89XC_20932517957..2518355 [-], 399FKBP-type peptidyl-prolyl cis-trans isomerase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins81Fasta
Identified as part of this study from CP000050