ICEberg
I. Information of ICE
ICEberg ID50
Name ICEXcaVe85-1 This is a putative ICE identified in this study by Blast
FamilyICEclc
OrganismXanthomonas campestris pv. vesicatoria str. 85-10
Size (bp)109232
GC content [Genome] (%)64.06[64.75]
Insertion sitetRNA-Gly(XCV_tRNA36)
FunctionStreptomycin resistance
Species that ICE can be transferred to-
Nucleotide SequenceAM039952 (complete ICE sequence in this genome)
Replicon chromosome (5178466 bp, BioProject:13649) [NC_007508]
Genome coordinates2631723..2740954 
Putative oriT region -
Putative relaxase coordinates: 2685446..2687278; Locus tag: XCV2356;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEXcaVe85-1 is not available.



The graph information of ICEXcaVe85-1 components from AM039952
Complete gene list of ICEXcaVe85-1 from AM039952
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1XCV22922626931..2627491 [-], 561conserved hypothetical protein
2XCV22932627507..2629150 [-], 1644conserved hypothetical protein
3XCV22942629143..2629403 [-], 261conserved hypothetical protein
4XCV22952629520..2629807 [+], 288putative ISxac3 transposase (fragment)
5XCV22962629816..2630676 [+], 861ISxac3 transposase
6XCV22972630792..2631196 [+], 405ISxac2 transposase
7XCV22982631949..2633892 [+], 1944phage-related integrase
8XCV22992633942..2634583 [-], 642transcriptional regulator, LysR family
9XCV23002634688..2634981 [+], 294conserved hypothetical protein
10XCV23012634988..2635878 [-], 891transcriptional regulator, LysR family
11XCV23022635915..2636238 [-], 324conserved hypothetical protein
12XCV23032636276..2637643 [-], 1368putative pyridine nucleotide-disulfide oxidoreductase
13XCV23042637684..2638490 [-], 807putative membrane protein
14XCV23052638509..2639021 [-], 513putative membrane protein
15dsbG2639117..2639890 [-], 774thiol:disulfide interchange protein
16XCV23072639893..2640729 [-], 837putative thiol disulfide interchange protein
17XCV23082640729..2642519 [-], 1791putative thiol:disulfide interchange protein
18qseB2642714..2643382 [+], 669two-component system regulatory protein
19qseC2643379..2644737 [+], 1359two-component system sensor protein
20trxB22644801..2645760 [-], 960thioredoxin reductase
21XCV23122645802..2646254 [-], 453conserved hypothetical protein
22XCV23132646404..2646724 [-], 321putative thioredoxinTraF_F, T4SS component 
23XCV23142646915..2647598 [+], 684transcriptional regulator, ArsR family
24XCV23152647616..2648260 [-], 645putative thiol:disulfide interchange protein
25XCV23162648324..2649223 [-], 900putative secreted protein
26XCV23172649362..2649826 [-], 465putative secreted protein
27XCV23182649936..2650913 [-], 978Tellurite-resistance/dicarboxylate transporter family protein
28XCV23192651001..2651258 [-], 258hypothetical protein
29XCV23202651486..2652280 [+], 795IS6100 transposase
30XCV23212652252..2652650 [-], 399putative transposase (fragment)
31XCV23222652856..2654583 [+], 1728transposaseIntegrase 
32XCV23232654679..2655563 [+], 885transcriptional regulator, LysR family
33XCV23242655862..2656419 [-], 558conserved hypothetical protein
34strB2656581..2657426 [-], 846Streptomycin 3''-kinase
35strA2657417..2658220 [-], 804Streptomycin 3''-kinase
36XCV23272658286..2658900 [-], 615putative resolvase
37XCV23282659004..2659402 [-], 399putative TniQ-related transposition protein
38XCV23292659444..2660238 [-], 795IS6100 transposase
39XCV23302660237..2660731 [+], 495conserved hypothetical protein
40XCV23312660734..2661882 [+], 1149putative amine oxidase
41XCV23322661901..2663079 [+], 1179putative aminotransferase
42XCV23332663116..2664144 [+], 1029putative Zn-dependent alcohol dehydrogenase
43XCV23342664197..2665426 [+], 1230putative major facilitator superfamily protein
44XCV23352665500..2665979 [-], 480transcriptional regulator, MerR family
45copA2665995..2668496 [-], 2502Copper-translocating P-type ATPase
46XCV23372668664..2669017 [+], 354transcriptional regulator, ArsR family
47zitB2669206..2670207 [+], 1002cobalt-zinc-cadmium resistance protein
48XCV23392670529..2671620 [+], 1092putative major facilitator superfamily protein
49XCV23402671639..2672433 [-], 795IS6100 transposase
50XCV23412672369..2673253 [-], 885conserved hypothetical protein
51tniB2673250..2674158 [-], 909Transposition protein TniB
52XCV23432674161..2675879 [-], 1719putative transposase
53XCV23442676064..2676285 [+], 222hypothetical protein
54XCV23452676278..2677279 [+], 1002putative cytosine-specific DNA methylase
55XCV23462677528..2678370 [-], 843transcriptional regulator, AraC family
56XCV23472678446..2679021 [+], 576conserved hypothetical protein
57XCV23482679213..2679452 [+], 240hypothetical protein
58XCV23492679449..2679742 [-], 294putative transposase (fragment)
59XCV23502679943..2680959 [-], 1017putative major facilitator superfamily protein
60XCV23512681044..2682075 [+], 1032transposase
61XCV23522682207..2682647 [-], 441putative carboxymuconolactone decarboxylase
62XCV23532682750..2683544 [+], 795IS6100 transposase
63gcvA2683692..2684627 [+], 936transcriptional regulator, LysR family
64XCV23552684884..2685381 [+], 498conserved hypothetical protein
65XCV23562685446..2687278 [-], 1833conserved hypothetical proteinRelaxase, MOBH Family
66XCV23572687592..2688218 [+], 627conserved hypothetical protein
67XCV23582688231..2688848 [+], 618conserved hypothetical protein
68XCV23592688948..2689310 [+], 363putative membrane protein
69XCV23602689317..2690840 [-], 1524putative membrane proteinTfc19, T4SS component 
70XCV23612690855..2691226 [-], 372putative membrane protein
71XCV23622691223..2692620 [-], 1398putative membrane proteinTfc22, T4SS component 
72XCV23632692630..2693577 [-], 948putative secreted proteinTfc23, T4SS component 
73XCV23642693574..2694020 [-], 447putative secreted proteinTfc24, T4SS component 
74XCV23652694183..2694677 [-], 495RadC family DNA repair protein
75XCV23662694859..2695644 [-], 786putative membrane protein
76XCV23672695658..2698525 [-], 2868conserved hypothetical proteinTfc16, T4SS component 
77XCV23682698525..2698965 [-], 441putative secreted proteinTfc15, T4SS component 
78XCV23692698946..2700376 [-], 1431putative secreted proteinTfc14, T4SS component 
79XCV23702700366..2701280 [-], 915putative secreted proteinTfc13, T4SS component 
80XCV23712701277..2701969 [-], 693putative secreted proteinTfc12, T4SS component 
81XCV23722701966..2702364 [-], 399putative membrane proteinTfc11, T4SS component 
82XCV23732702377..2702733 [-], 357putative membrane proteinTfc10, T4SS component 
83XCV23742702751..2702984 [-], 234putative membrane protein
84XCV23752702981..2703361 [-], 381putative secreted proteinTfc9, T4SS component 
85XCV23762703460..2704209 [-], 750putative membrane proteinTfc8, T4SS component 
86XCV23772704206..2706398 [-], 2193putative membrane proteinTfc6, T4SS component 
87XCV23782706403..2706942 [-], 540putative secreted proteinTfc5, T4SS component 
88XCV23792706939..2707529 [-], 591putative lytic transglycosylase precursorTfc4, T4SS component 
89XCV23802707511..2708236 [-], 726putative secreted proteinTfc3, T4SS component 
90XCV23812708249..2708818 [-], 570putative secreted proteinTfc2, T4SS component 
91XCV23822708872..2709471 [-], 600putative secreted proteinTfc2, T4SS component 
92XCV23832709660..2710748 [-], 1089hypothetical protein
93XCV23842710765..2712960 [-], 2196putative cytochrome precursor
94XCV23852713288..2713974 [-], 687hypothetical protein
95XCV23862714086..2716365 [-], 2280putative helicase
96XCV23872716501..2716806 [-], 306conserved hypothetical protein
97XCV23882716897..2717217 [-], 321conserved hypothetical protein
98XCV23892717269..2718378 [-], 1110conserved hypothetical protein
99XCV23902718443..2719093 [-], 651conserved hypothetical protein
100XCV23912719170..2719430 [-], 261conserved hypothetical protein
101XCV23922719447..2719854 [-], 408conserved hypothetical protein
102XCV23932719955..2720278 [-], 324conserved hypothetical protein
103XCV23942720373..2721062 [-], 690conserved hypothetical protein
104XCV23952721120..2722352 [-], 1233conserved hypothetical protein
105XCV23962722403..2722756 [-], 354conserved hypothetical protein
106XCV23972722836..2723057 [-], 222hypothetical protein
107XCV23982723054..2723866 [-], 813conserved hypothetical protein
108XCV23992724149..2724427 [-], 279conserved hypothetical protein
109XCV24002724525..2725262 [-], 738conserved hypothetical protein
110XCV24012725342..2726028 [-], 687conserved hypothetical protein
111XCV24022726174..2726566 [-], 393conserved hypothetical protein
112XCV24032726588..2726974 [-], 387conserved hypothetical protein
113XCV24042727132..2727884 [-], 753conserved hypothetical protein
114XCV24052727933..2729549 [-], 1617DNA methyltransferase
115topB22730083..2732095 [-], 2013DNA topoisomerase III
116XCV24072732369..2732821 [-], 453single-stranded DNA binding protein
117XCV24082732895..2733422 [-], 528conserved hypothetical protein
118XCV24092733419..2734201 [-], 783conserved hypothetical protein
119XCV24102734518..2735765 [-], 1248conserved hypothetical protein
120XCV24112735768..2736328 [-], 561conserved hypothetical protein
121XCV24122736344..2737999 [-], 1656conserved hypothetical protein
122XCV24132737992..2738240 [-], 249conserved hypothetical protein
123XCV24142738224..2739099 [-], 876chromosome partitioning related protein
124XCV24152739142..2739354 [-], 213putative regulatory protein, AlpA family
125XCV24162739473..2740228 [-], 756conserved hypothetical protein
126XCV24172741536..2742828 [+], 1293UDP-glucose/GDP-mannose dehydrogenase
127XCV24182742812..2744074 [-], 1263putative secreted protein
128fkpA2744085..2744528 [-], 444FKBP-type peptidyl-prolyl cis-trans isomerase
129XCV24202744576..2744941 [+], 366putative membrane protein
130XCV24212745041..2745787 [+], 747conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins119Fasta
Identified as part of this study from AM039952