ICEberg
I. Information of ICE
ICEberg ID466
Name ICEPluTTO1-1 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPhotorhabdus luminescens subsp. laumondii TTO1
Size (bp)141067
GC content [Genome] (%)50.72
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred to-
Nucleotide SequenceBX470251 (complete ICE sequence in this genome)
Replicon chromosome (5688987 bp, BioProject:9605) [NC_005126]
Genome coordinates1210804..1351870 
Putative oriT region -
Putative relaxase coordinates: 1348814..1350334; Locus tag: plu1165;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEPluTTO1-1 is not available.



The graph information of ICEPluTTO1-1 components from BX470251
Complete gene list of ICEPluTTO1-1 from BX470251
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1plu10261206111..1206359 [+], 249-
2plu10271206489..1207412 [+], 924-
3plu10281208112..1209653 [+], 1542-
4plu10291209731..1210732 [+], 1002-
5plu10301211267..1212151 [+], 885-
6plu10311212144..1213523 [+], 1380-
7plu10321213520..1215250 [+], 1731-
8plu10331215243..1215494 [+], 252-
9plu10341215558..1216148 [+], 591-
10plu10351216377..1217660 [+], 1284-
11plu10361217929..1218627 [+], 699-
12plu10371218631..1220661 [+], 2031-
13plu10381221321..1221779 [+], 459-
14plu10391221853..1222317 [+], 465-
15plu10401222387..1222740 [-], 354-
16plu10411223042..1223710 [-], 669-
17plu10421223697..1224584 [-], 888-
18plu10431224597..1225490 [-], 894-
19plu10441225626..1225862 [+], 237-
20plu10451226396..1226644 [+], 249-
21plu10461226723..1226911 [-], 189-
22plu10471227215..1227544 [+], 330-
23plu10481227568..1227777 [+], 210-
24pilL1227925..1228974 [+], 1050-Tfc2, T4SS component 
25pilM1228981..1229418 [+], 438-
26pilN1229437..1231140 [+], 1704-
27pilO1231164..1232480 [+], 1317-
28pilP1232488..1232952 [+], 465-
29pilQ1232966..1234519 [+], 1554-
30pilR1234512..1235597 [+], 1086-
31pilS1235666..1236268 [+], 603-
32pilU1236269..1236934 [+], 666-
33pilV1237000..1238178 [+], 1179-
34plu10591238535..1238837 [+], 303-
35plu10601238831..1239166 [+], 336-
36IS_Pl3_31239230..1240735 [+], 1506-
37plu10621240768..1240995 [+], 228-
38plu10631241216..1241461 [+], 246-
39plu10641241604..1241915 [-], 312-
40plu10651241918..1242235 [-], 318-
41plu10661242318..1242503 [+], 186-
42plu10671242887..1243687 [+], 801-Tfc2, T4SS component 
43plu10681243690..1244427 [+], 738-Tfc3, T4SS component 
44plu10691244457..1245029 [+], 573-Tfc4, T4SS component 
45plu10701245035..1245571 [+], 537-Tfc5, T4SS component 
46ISPlu9I1247608..1248990 [-], 1383Transposase, IS4 Familly
47plu10741249310..1250062 [+], 753-Tfc8, T4SS component 
48plu10751250272..1251342 [-], 1071-
49plu10781251860..1252135 [+], 276-Tfc9, T4SS component 
50plu10791252132..1252368 [+], 237-
51plu10801252408..1252794 [+], 387-Tfc10, T4SS component 
52plu10811252813..1253190 [+], 378-Tfc11, T4SS component 
53plu10821253840..1254763 [+], 924-Tfc13, T4SS component 
54plu10831254753..1256231 [+], 1479-Tfc14, T4SS component 
55plu10841256218..1256646 [+], 429-Tfc15, T4SS component 
56plu10851256643..1259525 [+], 2883-Tfc16, T4SS component 
57plu10861259522..1259932 [+], 411-Tfc24, T4SS component 
58plu10871259929..1260927 [+], 999-Tfc23, T4SS component 
59plu10881260943..1262370 [+], 1428-Tfc22, T4SS component 
60plu10891262370..1262744 [+], 375-
61plu10901262741..1264255 [+], 1515-Tfc19, T4SS component 
62plu10911264305..1264685 [-], 381-
63plu10921265071..1265565 [+], 495-
64plu10931265576..1265686 [+], 111-
65plu10941265654..1265797 [-], 144-
66plu10951265844..1266410 [-], 567-
67plu10961266684..1266932 [+], 249-
68plu10971267164..1267526 [+], 363-
69plu10991267699..1267932 [-], 234-
70plu11041268942..1269532 [+], 591-
71plu11051269554..1270846 [+], 1293-
72plu11061271090..1272238 [+], 1149-
73plu11101274553..1274753 [+], 201-
74plu11111274750..1276159 [+], 1410-
75ISPlu9H1292244..1293626 [+], 1383Transposase, IS4 Familly
76ISPlu6J1299015..1299899 [-], 885Transposase, IS982 Familly
77plu11191300741..1301538 [-], 798-
78plu11201301550..1301894 [-], 345-
79plu11211301903..1302778 [-], 876-
80plu11221302920..1303225 [-], 306-
81plu11231303222..1304076 [-], 855-
82plu11241304098..1304553 [-], 456-
83plu11251304929..1306041 [-], 1113-Integrase 
84plu11261306028..1309342 [-], 3315-
85plu11271309475..1309813 [+], 339-
86plu11281309906..1310148 [+], 243-
87plu11291310193..1310510 [-], 318-
88plu11301310507..1311418 [-], 912-
89plu11311311883..1312503 [-], 621-
90plu11321312578..1312841 [-], 264-
91plu11331312831..1313517 [-], 687-
92plu11341313539..1313805 [-], 267-
93plu11351314357..1315487 [-], 1131-
94plu11361315474..1318788 [-], 3315-
95plu11371318976..1319311 [+], 336-
96plu11381319410..1319652 [+], 243-
97plu11391319698..1320117 [-], 420-
98plu11401320126..1321181 [-], 1056-
99plu11411321203..1321463 [-], 261-
100plu11421321519..1321791 [+], 273-
101plu11431322021..1323151 [-], 1131-
102plu11441323138..1324604 [-], 1467-
103plu11451324640..1326451 [-], 1812-
104plu11461326639..1326974 [+], 336-
105plu11471327073..1327315 [+], 243-
106plu11481327361..1327780 [-], 420-
107plu11491327789..1336602 [-], 8814-
108plu11501336651..1338315 [-], 1665-
109plu11511339111..1339404 [+], 294-
110plu11521339794..1340684 [+], 891-
111plu11531341127..1341291 [+], 165-
112plu11541341304..1341525 [+], 222-
113plu11551341538..1341924 [+], 387-
114plu11561341924..1342220 [+], 297-
115plu11571342298..1342771 [+], 474-
116plu11581342839..1344812 [+], 1974-
117plu11591344912..1345823 [+], 912-
118plu11601345889..1346221 [+], 333-
119plu11611346310..1346498 [+], 189-
120plu11621346628..1347548 [+], 921-
121plu11631347696..1348418 [+], 723-
122plu11641348552..1348731 [+], 180-
123plu11651348814..1350334 [+], 1521-Relaxase, MOBH Family
124plu11661350429..1351430 [+], 1002-
125mltC1352053..1353126 [-], 1074membrane-bound lytic murein transglycosylase C precursor (murein hydrolase C)
126plu11681353190..1353462 [-], 273-
127mutY1353493..1354530 [-], 1038A/G-specific adenine glycosylase
128plu11701354903..1355622 [+], 720-
129plu11711355622..1355948 [+], 327-
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins120Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
 
in_silico in silico analysis literature