ICEberg
I. Information of ICE
ICEberg ID450
Name ICEVscSpa1 This ICE is derived from experimental literature
FamilySXT/R391
OrganismVibrio scophthalmi ACC7
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred toEscherichia coli CAG18420; Escherichia coli BI533
Nucleotide SequenceHE577621 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVscSpa1 is not available.



The graph information of ICEVscSpa1 components from HE577621
Incomplete gene list of ICEVscSpa1 from HE577621
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1s0431..176 [+], 176putative conjugation coupling factor
2s044202..480 [-], 279putative antitoxin component
3s045477..800 [-], 324putative toxin component
4traL975..1055 [+], 81putative TraL sex pilus assembly and synthesis proteinTraL_F, T4SS component 
5mosT1965..2903 [+], 939putative MosT toxin component
6spa013483..6212 [+], 2730hypothetical protein
7spa026209..7318 [+], 1110hypothetical protein
8spa037331..8863 [+], 1533hypothetical protein
9spa049178..10311 [+], 1134hypothetical protein
10s05410457..10669 [+], 213hypothetical protein
11traN10680..10896 [+], 217putative TraN pilus assembly and synthesis proteinTraN_F, T4SS component 
12ORF6411490..12152 [+], 663hypothetical protein
 
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins12Fasta
(1) Rodriguez-Blanco A; Lemos ML; Osorio CR (2012). Integrating conjugative elements as vectors of antibiotic, mercury, and quaternary ammonium compound resistance in marine aquaculture environments. Antimicrob Agents Chemother. 56(5):2619-26. [PudMed:22314526] experimental
 
experimental experimental literature