ICEberg
I. Information of ICE
ICEberg ID433
Name ICESpnR6-1 This is a predicted ICE derived from literature
FamilyPPI-1
OrganismStreptococcus pneumoniae R6
Size (bp)36386
GC content [Genome] (%)31.55[39.72]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAE007317 (complete ICE sequence in this genome)
Replicon chromosome (2038615 bp, BioProject:278) [NC_003098]
Genome coordinates919089..955474 
Putative oriT region -
Putative relaxase coordinates: 938857..939474; Locus tag: spr0957;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESpnR6-1 is not available.



The graph information of ICESpnR6-1 components from AE007317
Complete gene list of ICESpnR6-1 from AE007317
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1spr0929914516..915523 [+], 1008Hypothetical protein
2spr0930915523..916137 [+], 615Conserved hypothetical protein
3spr0931916211..917185 [+], 975Conserved hypothetical protein
4spr0932917259..918890 [+], 1632Conserved hypothetical protein
5spr0933919628..919846 [+], 219Hypothetical protein
6ABC-SBP920239..921264 [+], 1026ABC transporter substrate-binding protein - iron transport
7ABC-MSP921242..922261 [+], 1020ABC transporter membrane-spanning permease - iron transport
8ABC-MSP922261..923268 [+], 1008ABC transporter membrane-spanning permease - iron transport
9spr0937922743..923156 [-], 414Hypothetical protein
10ABC-NBD923268..924062 [+], 795ABC transporter ATP-binding protein - iron transport
11spr0939924630..924839 [+], 210Hypothetical protein
12spr0940924964..925119 [+], 156Hypothetical protein
13spr0941925803..925964 [+], 162Hypothetical protein
14ccrB926056..927735 [+], 1680Low similarity to site-specific recombinaseIntegrase 
15spr0943927958..928569 [+], 612Hypothetical protein
16spr0944928882..929079 [+], 198Hypothetical protein
17spr0945929141..929956 [+], 816Hypothetical protein
18spr0946929956..930810 [+], 855Conserved hypothetical protein
19spr0947930871..931806 [+], 936Conserved hypothetical protein
20nplT931945..933708 [+], 1764Neopullulanase
21spr0949933794..934111 [+], 318Hypothetical protein
22spr0950934157..934438 [+], 282Hypothetical protein
23spr0951934826..935359 [+], 534Hypothetical protein
24spr0952935359..936120 [+], 762Conserved hypothetical protein
25spr0953936148..936924 [+], 777Hypothetical protein
26spr0954936852..937304 [+], 453Hypothetical protein
27spr0955938136..938495 [+], 360Hypothetical protein
28spr0956938505..938834 [+], 330Hypothetical protein
29spr0957938857..939474 [+], 618Tn5252, relaxase, truncationRelaxase, MOBP Family
30spr0958939505..940062 [+], 558Tn5252, relaxase, truncation
31spr0959940146..940742 [+], 597Hypothetical protein
32mutR940787..941641 [-], 855Similar to positive transcriptional regulator MutR
33rffD941893..943188 [+], 1296UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
34spr0962943148..943798 [+], 651Conserved hypothetical protein
35spr0963943808..944590 [+], 783Hypothetical protein
36spr0964944613..946505 [+], 1893Hypothetical protein
37spr0965946534..947640 [+], 1107Hypothetical protein
38spr0966947648..948958 [+], 1311Conserved hypothetical protein
39spr0967948960..950183 [+], 1224Conserved hypothetical protein
40spr0968950173..951123 [+], 951Hypothetical protein
41nikS951138..952337 [+], 1200Nikkomycin biosynthesis protein, carboxylase
42spr0970952356..953000 [+], 645Conserved hypothetical protein
43mefE953383..954594 [+], 1212ABC transporter membrane-spanning permease - macrolide efflux
44spr0972955253..955474 [+], 222Conserved hypothetical protein
45ftsW956376..957605 [+], 1230Cell division protein FtsW
46ppc957625..960321 [+], 2697Phosphoenolpyruvate carboxylase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins40Fasta
(1) Croucher NJ; Walker D; Romero P; Lennard N; Paterson GK; Bason NC; Mitchell AM; Quail MA; Andrew PW; Parkhill J; Bentley SD; Mitchell TJ (2009). Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 191(5):1480-9. [PudMed:19114491]