ICEberg
I. Information of ICE
ICEberg ID432
Name ICESpnD39-1 This is a predicted ICE derived from literature
FamilyPPI-1
OrganismStreptococcus pneumoniae D39
Size (bp)36386
GC content [Genome] (%)31.55[39.71]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000410 (complete ICE sequence in this genome)
Replicon chromosome (2046115 bp, BioProject:16374) [NC_008533]
Genome coordinates926620..963005 
Putative oriT region -
Putative relaxase coordinates: 946388..947005; Locus tag: SPD_0936;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESpnD39-1 is not available.



The graph information of ICESpnD39-1 components from CP000410
Complete gene list of ICESpnD39-1 from CP000410
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SPD_0911922047..923054 [+], 1008conserved hypothetical protein
2pvaA923054..923668 [+], 615pneumococcal vaccine antigen A
3SPD_0913923742..924716 [+], 975conserved hypothetical protein
4rumA-1924790..926421 [+], 163223S rRNA (uracil-5-)-methyltransferase RumA
5SPD_0915927770..928795 [+], 1026iron-compound ABC transporter, iron compound-binding protein
6SPD_0916928785..929792 [+], 1008iron-compound ABC transporter, permease protein
7SPD_0917929792..930799 [+], 1008iron-compound ABC transporter, permease protein
8SPD_0918930799..931593 [+], 795iron-compound ABC transporter, ATP-binding protein
9SPD_0919932495..932650 [+], 156conserved hypothetical protein
10SPD_0920933334..933495 [+], 162conserved hypothetical protein
11SPD_0921933587..935266 [+], 1680site-specific recombinase, resolvase family proteinIntegrase 
12SPD_0922935489..936100 [+], 612conserved hypothetical protein
13SPD_0923936413..936610 [+], 198conserved hypothetical protein
14SPD_0924936672..937487 [+], 816conserved hypothetical protein
15SPD_0925937487..938341 [+], 855hydrolase, putative
16SPD_0926938453..939337 [+], 885conserved hypothetical protein TIGR00147
17nplT939476..941239 [+], 1764Neopullulanase
18SPD_0928941325..941642 [+], 318conserved hypothetical protein
19SPD_0929941688..941969 [+], 282conserved hypothetical protein
20SPD_0930942414..942890 [+], 477transcriptional regulator, putative
21SPD_0931942890..943651 [+], 762conserved hypothetical protein
22SPD_0932943679..944455 [+], 777conserved hypothetical protein
23SPD_0933944383..944835 [+], 453conserved hypothetical protein
24SPD_0934945667..946026 [+], 360Tn5252, Orf 10 protein
25SPD_0935946036..946365 [+], 330Tn5252, Orf 9 protein
26SPD_0936946388..947005 [+], 618Tn5252, relaxaseRelaxase, MOBP Family
27SPD_0938947686..948273 [+], 588conserved hypothetical protein
28SPD_0939948318..949172 [-], 855transcriptional activator, Rgg/GadR/MutR family protein
29SPD_0940949424..950719 [+], 1296UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase, putative
30SPD_0941950721..951329 [+], 609conserved hypothetical protein
31SPD_0942951339..952121 [+], 783conserved hypothetical protein
32SPD_0943952144..954036 [+], 1893conserved hypothetical protein
33SPD_0944954065..955171 [+], 1107conserved hypothetical protein
34SPD_0945955179..956489 [+], 1311AMP-binding enzyme, putative
35SPD_0946956491..957714 [+], 1224conserved hypothetical protein
36SPD_0947957719..958654 [+], 936membrane protein, putative
37SPD_0948958669..959868 [+], 1200conserved hypothetical protein
38SPD_0949959932..960531 [+], 600bacterial transferase hexapeptide (three repeats), putative
39SPD_0950960914..962125 [+], 1212transporter, major facilitator family protein
40SPD_0951962784..963005 [+], 222conserved hypothetical protein
41SPD_0952963907..965136 [+], 1230cell division protein FtsW, putative
42ppc965156..967852 [+], 2697phosphoenolpyruvate carboxylase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins36Fasta
(1) Croucher NJ; Walker D; Romero P; Lennard N; Paterson GK; Bason NC; Mitchell AM; Quail MA; Andrew PW; Parkhill J; Bentley SD; Mitchell TJ (2009). Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 191(5):1480-9. [PudMed:19114491]