ICEberg
I. Information of ICE
ICEberg ID428
Name ICESauJKD6008-2 This is a putative ICE identified in this study by Blast
FamilyTn5801
OrganismStaphylococcus aureus subsp. aureus str. JKD6008
Size (bp)28014
GC content [Genome] (%)35.81[32.89]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002120 (complete ICE sequence in this genome)
Replicon[CP002120]
Genome coordinates426893..454906 
Putative oriT region -
Putative relaxase coordinates: 444852..446036; Locus tag: SAA6008_00407;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESauJKD6008-2 is not available.



The graph information of ICESauJKD6008-2 components from CP002120
Complete gene list of ICESauJKD6008-2 from CP002120
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1xprT421916..422494 [+], 579putative xanthine phosphoribosyltransferase
2pbuX422494..423762 [+], 1269NCS2 family nucleobase:cation symporter-2
3guaB423800..425266 [+], 1467putative inosine-5'-monophosphate dehydrogenase
4guaA425291..426832 [+], 1542bifunctional GMP synthase/glutamine amidotransferase protein
5SAA6008_00391426900..428093 [-], 1194integrase-like proteinIntegrase 
6SAA6008_00392429045..429527 [-], 483Sigma-70 Region 4 protein
7SAA6008_00393429998..430351 [+], 354putative transcriptional regulator
8tetM430695..432629 [-], 1935tetracycline resistance protein TetM
9SAA6008_00395432991..433953 [-], 963conserved hypothetical proteinOrf13_Tn, T4SS component 
10SAA6008_00396433937..434929 [-], 993conserved hypothetical proteinOrf14_Tn, T4SS component 
11SAA6008_00397434956..436983 [-], 2028conserved hypothetical proteinOrf15_Tn, T4SS component 
12SAA6008_00398436980..439433 [-], 2454putative ATP/GTP-binding proteinOrf16_Tn, T4SS component 
13SAA6008_00399439417..439812 [-], 396conserved hypothetical proteinOrf17_Tn, T4SS component 
14SAA6008_00400439884..440513 [-], 630conserved hypothetical protein
15SAA6008_00401440542..441270 [-], 729Transposase-associated ATP/GTP binding proteinTrbB, T4SS component 
16SAA6008_00402441270..442697 [-], 1428putative transposase
17ardA442965..443465 [-], 501putative antirestriction protein
18SAA6008_00405443526..444287 [-], 762conserved hypothetical protein
19SAA6008_00406444347..444517 [-], 171conserved hypothetical proteinOrf19_Tn, T4SS component 
20SAA6008_00407444852..446036 [-], 1185replication initiation factorRelaxase, MOBT Family
21SAA6008_00409446218..447621 [-], 1404DNA segregation ATPase FtsK/SpoIIIEOrf21_Tn, T4SS component 
22SAA6008_00410447643..448416 [-], 774conserved hypothetical protein
23SAA6008_00411448426..448803 [-], 378conserved hypothetical protein
24SAA6008_00412448824..449138 [-], 315conserved hypothetical protein
25uvrD449338..451131 [-], 1794UvrD/REP helicase
26recF_1451128..453317 [-], 2190recombinational DNA repair ATPase, RecF_1
27SAA6008_00415453451..454302 [-], 852transposase
28SAA6008_00416455142..455678 [-], 537conserved hypothetical protein
29SAA6008_00417456071..456775 [-], 705PemK-like protein
30SAA6008_00419457707..457859 [-], 153conserved hypothetical protein
31SAA6008_00420458383..458742 [-], 360conserved hypothetical protein
32SAA6008_00421458761..459606 [-], 846cobalt (Co2+) ABC superfamily ATP binding cassette transporter, membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins23Fasta
Identified as part of this study from CP002120