ICEberg
I. Information of ICE
ICEberg ID425
Name ICESpsED99-1 This is a putative ICE identified in this study by Blast
FamilyTn5801
OrganismStaphylococcus pseudintermedius ED99
Size (bp)25620
GC content [Genome] (%)35.38[37.65]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002478 (complete ICE sequence in this genome)
Replicon[CP002478]
Genome coordinates2485813..2511432 
Putative oriT region -
Putative relaxase coordinates: 2494676..2495860; Locus tag: SPSE_2422;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpsED99-1 is not available.



The graph information of ICESpsED99-1 components from CP002478
Complete gene list of ICESpsED99-1 from CP002478
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SPSE_24092482120..2482539 [-], 420conserved hypothetical protein
2SPSE_24102482896..2483093 [-], 198conserved hypothetical protein
3SPSE_24112483333..2483593 [-], 261hypothetical protein
4SPSE_24152486071..2487261 [+], 1191transposase, IS256 family
5SPSE_24162487395..2489584 [+], 2190conserved hypothetical protein
6SPSE_24172489581..2491374 [+], 1794conserved hypothetical protein
7SPSE_24182491574..2491888 [+], 315conserved hypothetical protein
8SPSE_24192491909..2492286 [+], 378conserved hypothetical protein
9SPSE_24202492296..2493069 [+], 774conserved hypothetical protein
10SPSE_24212493091..2494494 [+], 1404conserved hypothetical proteinOrf21_Tn, T4SS component 
11SPSE_24222494676..2495860 [+], 1185transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
12SPSE_24232496144..2496365 [+], 222conserved hypothetical proteinOrf19_Tn, T4SS component 
13SPSE_24242496407..2497186 [+], 780conserved hypothetical protein
14SPSE_24252497247..2497747 [+], 501conserved hypothetical protein
15SPSE_24262497803..2498441 [+], 639conserved hypothetical protein
16SPSE_24272498513..2498908 [+], 396conserved hypothetical proteinOrf17_Tn, T4SS component 
17SPSE_24282498892..2501345 [+], 2454conserved hypothetical proteinOrf16_Tn, T4SS component 
18SPSE_24292501342..2503369 [+], 2028conserved hypothetical proteinOrf15_Tn, T4SS component 
19SPSE_24302503366..2504388 [+], 1023lipoprotein, NLP/P60 familyOrf14_Tn, T4SS component 
20SPSE_24312504405..2505334 [+], 930conserved hypothetical proteinOrf13_Tn, T4SS component 
21SPSE_24322505711..2507630 [+], 1920tetracycline resistance protein tetM
22SPSE_24332507974..2508327 [-], 354transcriptional regulator, putative
23SPSE_24342508858..2509280 [+], 423conserved hypothetical protein
24SPSE_24352509277..2509507 [+], 231conserved hypothetical protein
25SPSE_24362510005..2510205 [+], 201conserved hypothetical protein
26SPSE_24372510232..2511425 [+], 1194integraseIntegrase 
27guaA2511493..2513034 [-], 1542GMP synthase
28guaB2513057..2514523 [-], 1467inosine-5'-monophosphate dehydrogenase
29pbuX2514561..2515829 [-], 1269xanthine permease
30xpt2515826..2516410 [-], 585xanthine phosphoribosyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins23Fasta
Identified as part of this study from CP002478