ICEberg
I. Information of ICE
ICEberg ID42
Name pMERPH This ICE is derived from experimental literature
FamilySXT/R391
OrganismShewanella putrefaciens
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
FunctionResistance to mercury
Species that ICE can be transferred to-
Nucleotide SequenceEF434291; AY157600; AJ507319; AJ634267; AJ579923; AJ579925; AJ579924; AJ579929 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of pMERPH is not available.



The graph information of pMERPH components from AJ507319
Incomplete gene list of pMERPH from AJ507319
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1merR69..458 [+], 390putative mercury resistance transcriptional regulator protein


The graph information of pMERPH components from AJ579924
Incomplete gene list of pMERPH from AJ579924
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..584 [+], 584putative transfer proteinTraD_F, T4SS component 


The graph information of pMERPH components from AJ579923
Incomplete gene list of pMERPH from AJ579923
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1int1..1138 [+], 1138putative integraseIntegrase 


The graph information of pMERPH components from AJ634267
Incomplete gene list of pMERPH from AJ634267
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1int1..1242 [+], 1242putative integraseIntegrase 


The graph information of pMERPH components from AJ579929
Incomplete gene list of pMERPH from AJ579929
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-56..265 [+], 210putative conjugative transfer protein


The graph information of pMERPH components from AY157600
Incomplete gene list of pMERPH from AY157600
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..648 [+], 648putative regulatory protein


The graph information of pMERPH components from EF434291
Incomplete gene list of pMERPH from EF434291
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1traG1..144 [+], 144TraGTraG_F, T4SS component 
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
(2) McGrath BM; O'Halloran JA; Pembroke JT (2005). Pre-exposure to UV irradiation increases the transfer frequency of the IncJ conjugative transposon-like elements R391, R392, R705, R706, R997 and pMERPH and is recA+ dependent. FEMS Microbiol Lett. 243(2):461-5. [PudMed:15686850] experimental
(3) McGrath BM; Pembroke JT (2004). Detailed analysis of the insertion site of the mobile elements R997, pMERPH, R392, R705 and R391 in E. coli K12. FEMS Microbiol Lett. 237(1):19-26. [PudMed:15268933] experimental
(4) Boltner D; Osborn AM (2004). Structural comparison of the integrative and conjugative elements R391, pMERPH, R997, and SXT. Plasmid. 51(1):12-23. [PudMed:14711525] experimental
(5) Peters SE; Hobman JL; Strike P; Ritchie DA (1991). Novel mercury resistance determinants carried by IncJ plasmids pMERPH and R391. Mol Gen Genet. 228(1-2):294-9. [PudMed:1886614] experimental
 
experimental experimental literature