ICEberg
I. Information of ICE
ICEberg ID41
Name ICEPmiJpn1 This ICE is derived from experimental literature
FamilySXT/R391
OrganismProteus mirabilis TUM4660
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
FunctionAntibiotic resistance genes: blaCMY-2
Species that ICE can be transferred toEscherichia coli; Klebsiella pneumoniae; Salmonella enterica serovar Typhimurium; Citrobacter koseri
Nucleotide SequenceAB525688; AB525230; AB525229; AB525228; AB525227; AB525226; AB525225 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEPmiJpn1 is not available.



The graph information of ICEPmiJpn1 components from AB525230
Incomplete gene list of ICEPmiJpn1 from AB525230
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1prfC316..422 [+], 107peptide chain release factor 3


The graph information of ICEPmiJpn1 components from AB525229
Incomplete gene list of ICEPmiJpn1 from AB525229
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1traG1..197 [+], 197sex pilus assembly proteinTraG_F, T4SS component 
2eexS230..661 [-], 432EexS protein
3setC716..1012 [-], 297transcriptional activator


The graph information of ICEPmiJpn1 components from AB525228
Incomplete gene list of ICEPmiJpn1 from AB525228
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1s0731..662 [+], 662hypothetical protein
2jpn03682..2325 [+], 1644hypothetical protein
3jpn042329..3756 [+], 1428hypothetical protein
4traF3997..4328 [+], 332sex pilus assembly proteinTraF_F, T4SS component 


The graph information of ICEPmiJpn1 components from AB525227
Incomplete gene list of ICEPmiJpn1 from AB525227
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1traN1..53 [+], 53TraN
2orf64647..1309 [+], 663hypothetical protein
3orf651400..1487 [-], 88hypothetical protein


The graph information of ICEPmiJpn1 components from AB525226
Incomplete gene list of ICEPmiJpn1 from AB525226
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1s052196..1029 [+], 834hypothetical protein
2s0531022..1960 [+], 939ync protein


The graph information of ICEPmiJpn1 components from AB525225
Incomplete gene list of ICEPmiJpn1 from AB525225
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1orf361..72 [+], 72hypothetical protein
2orf3799..686 [-], 588hypothetical protein
3traL974..1056 [+], 83TraLTraL_F, T4SS component 


The graph information of ICEPmiJpn1 components from AB525688
Incomplete gene list of ICEPmiJpn1 from AB525688
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1prfC179..271 [+], 93peptide chain release factor 3
2-365..688 [-], 324hypothetical protein
3-1036..1356 [+], 321hypothetical protein
4-1349..2563 [+], 1215hypothetical protein
5xis2774..2974 [+], 201Xis
6int2991..4232 [-], 1242IntIntegrase 
7-4234..4503 [-], 270hypothetical protein
8-4506..5480 [-], 975hypothetical protein
9-5585..5791 [-], 207hypothetical protein
10-6190..6360 [-], 171hypothetical protein
11rumB6399..7706 [-], 1308RumB
12rumA7675..8124 [-], 450RumA
13-8652..8969 [-], 318hypothetical protein
14-8764..9672 [+], 909hypothetical protein
15-9746..9946 [+], 201hypothetical protein
16Tn10L9956..11164 [-], 1209transposase
17bla12265..13410 [+], 1146beta-lactamase (CMY-2)AR 
18blc13504..14037 [+], 534outer membrane lipoprotein Blc
19sugE14034..14351 [-], 318quaternary ammonium compound-resistance protein SugE
20ecnR14608..15033 [+], 426entericidin R
21jpn0115067..20565 [+], 5499hypothetical protein
22dsbC20714..21421 [+], 708DsbCTrbB_I, T4SS component 
23traC21418..22125 [+], 708TraCTraC_F, T4SS component 
24Tn10R22926..24134 [-], 1209transposase
25-24437..25363 [+], 927hypothetical protein
26-25969..26553 [+], 585hypothetical protein
27-26572..30249 [+], 3678hypothetical protein
28jpn0230406..34023 [+], 3618hypothetical protein
29-34023..36692 [+], 2670hypothetical protein
30-36705..38945 [+], 2241hypothetical protein
31-38989..41640 [+], 2652hypothetical protein
32traI41795..41922 [+], 128TraI
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Mata C; Navarro F; Miro E; Walsh TR; Mirelis B; Toleman M (2011). Prevalence of SXT/R391-like integrative and conjugative elements carrying blaCMY-2 in Proteus mirabilis. J Antimicrob Chemother. 66(10):2266-70. [PudMed:21752830] experimental
(2) Harada S; Ishii Y; Saga T; Tateda K; Yamaguchi K (2010). Chromosomally encoded blaCMY-2 located on a novel SXT/R391-related integrating conjugative element in a Proteus mirabilis clinical isolate. Antimicrob Agents Chemother. 54(9):3545-50. [PudMed:20566768] experimental
 
experimental experimental literature