ICEberg
I. Information of ICE
ICEberg ID40
Name ICEPmiUSA1 This ICE is derived from experimental literature
FamilySXT/R391
OrganismProteus mirabilis HI4320
Size (bp)80632
GC content [Genome] (%)46.73[38.9]
Insertion siteprfC (PMI2422)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM942759 (complete ICE sequence in this genome)
Replicon chromosome (4063606 bp, BioProject:12624) [NC_010554]
Genome coordinates2649499..2730130 
Putative oriT region -
Putative relaxase coordinates: 2702478..2704628; Locus tag: PMI2476;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEPmiUSA1 is not available.



The graph information of ICEPmiUSA1 components from AM942759
Complete gene list of ICEPmiUSA1 from AM942759
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PMI24172644690..2644863 [-], 174hypothetical protein
2PMI24182645217..2646518 [-], 1302putative Na+ dependent nucleoside transporter
3PMI24192646806..2647588 [-], 783putative TatD-related deoxyribonuclease
4PMI24202647585..2648646 [-], 1062patatin-like phospholipase
5PMI24212648743..2649090 [-], 348putative phospholipid-binding protein
6prfC2649499..2651088 [-], 1590peptide chain release factor 3
7PMI24232651345..2651992 [-], 648putative phage repressor
8PMI24242652110..2652361 [+], 252phage regulatory protein
9PMI24252652417..2653286 [+], 870putative phage protein
10PMI24262653327..2653935 [+], 609putative phage protein
11PMI24272653922..2654470 [+], 549putative phage transglycosylaseOrf169_F, T4SS component 
12PMI24282654467..2654766 [+], 300putative phage protein
13PMI24292654763..2655296 [+], 534putative phage regulatory protein
14PMI24302655354..2655785 [+], 432putative phage membrane protein
15PMI24312655818..2659387 [-], 3570putative pilus assembly proteinTraG_F, T4SS component 
16PMI24322659391..2660779 [-], 1389putative pilus assembly proteinTraH_F, T4SS component 
17PMI24332660782..2661726 [-], 945putative pilus assemblyTraF_F, T4SS component 
18PMI24342662014..2663906 [-], 1893putative plasmid-related helicase
19PMI24352663903..2665867 [-], 1965putative plasmid-related protein
20PMI24362666041..2666241 [-], 201putative plasmid-related protein
21PMI24372666375..2667082 [-], 708putative plasmid-related protein
22PMI24382667172..2668245 [-], 1074putative plasmid-related protein
23PMI24392668337..2668678 [-], 342putative plasmid-related protein
24PMI24402668678..2669175 [-], 498putative plasmid-related DNA repair protein
25PMI24412669258..2670913 [-], 1656putative plasmid-related protein
26PMI24422670983..2671423 [-], 441putative plasmid-related protein
27PMI24432671485..2672438 [-], 954putative plasmid-related protein
28PMI24442672537..2673304 [-], 768putative plasmid-related protein
29PMI24452673304..2674263 [-], 960putative plasmid-related ATPase
30PMI24462674473..2675489 [-], 1017putative plasmid-related protein
31PMI24472675550..2675693 [-], 144putative plasmid-related protein
32PMI24482675777..2676595 [-], 819putative phage recombination protein
33PMI24492676675..2677094 [-], 420putative plasmid-related single-stranded DNA-binding protein
34PMI24502677110..2677436 [-], 327putative plasmid-related protein
35PMI24512677804..2678406 [+], 603putative plasmid-related protein
36PMI24522678515..2679189 [+], 675endonuclease precursor
37PMI24532679254..2679772 [-], 519putative plasmid-related regulatory protein
38PMI24542679792..2682065 [-], 2274putative plasmid-related membrane protein
39PMI24552682075..2682323 [-], 249putative plasmid-related glycin-rich membrane protein
40PMI24562682565..2686257 [-], 3693putative mating pair stabilization proteinTraN_F, T4SS component 
41PMI24572686260..2687288 [-], 1029putative plasmid pilus assemblyTraU_F, T4SS component 
42PMI24582687272..2688399 [-], 1128putative plasmid pilus assembly proteinTraW_F, T4SS component 
43PMI24592688407..2688919 [-], 513putative plasmid conjugation signal peptidaseTraF, T4SS component 
44PMI24602688903..2689250 [-], 348putative plasmid-related protein
45PMI24612689243..2691642 [-], 2400putative plasmid pilus assembly proteinTraC_F, T4SS component 
46PMI24622691642..2692334 [-], 693putative plasmid-related disulfide bond isomeraseTrbB_I, T4SS component 
47PMI24632692466..2693404 [-], 939putative plasmid-related protein
48PMI24642693397..2694230 [-], 834putative plasmid-related protein
49PMI24652694408..2694794 [-], 387putative plasmid-related proteinTraA_F, T4SS component 
50PMI24662694791..2695441 [-], 651putative plasmid-related proteinTraV_F, T4SS component 
51PMI24672695438..2696727 [-], 1290putative plasmid pilus assembly proteinTraB_F, T4SS component 
52PMI24682696730..2697629 [-], 900putative plasmid-related proteinTraK_F, T4SS component 
53PMI24692697610..2698236 [-], 627putative plasmid pilus assembly proteinTraE_F, T4SS component 
54PMI24702698233..2698514 [-], 282putative plasmid pilus assembly proteinTraL_F, T4SS component 
55PMI24712698550..2698789 [+], 240putative plasmid-related protein
56PMI24722698803..2699390 [+], 588putative plasmid-related protein
57PMI24732699417..2700061 [-], 645putative plasmid-related protein
58PMI24742700039..2700599 [-], 561putative plasmid-related protein
59PMI24752700609..2702429 [-], 1821putative plasmid conjugative transfer proteinTraD_F, T4SS component 
60PMI24762702478..2704628 [-], 2151putative plasmid conjugative relaxaseRelaxase, MOBH Family
61PMI24772704877..2707012 [-], 2136putative DNA helicaseTraI_F, T4SS component 
62PMI24782707018..2713440 [-], 6423putative DNA helicase
63PMI24792713633..2718603 [-], 4971putative plasmid-related protein
64PMI24802718606..2721569 [-], 2964putative plasmid ATP-dependent helicase
65PMI24812721596..2722519 [-], 924putative plasmid-related protein
66PMI24822722837..2723136 [-], 300putative plasmid-related protein
67PMI24832723224..2724129 [-], 906putative plasmid-related exonuclease
68umuD2724786..2725235 [+], 450DNA repair protein
69umuC2725243..2726511 [+], 1269DNA repair protein
70PMI2485A2726550..2726720 [+], 171putative plasmid-related protein
71PMI24862726717..2726878 [+], 162conjugative transposon protein
72PMI24872727158..2727325 [+], 168putative conjugative transposon protein
73PMI24882727430..2728404 [+], 975putative plasmid-related protein
74PMI24892728407..2728676 [+], 270putative plasmid-related protein
75PMI24902728678..2729919 [+], 1242integraseIntegrase 
76PMI24912729936..2730130 [-], 195putative DNA-binding protein
77PMI2491A2730733..2730804 [-], 72N-terminus of peptide chain release factor 3 (fragment)
78PMI24922731174..2731710 [+], 537conserved hypothetical protein
79PMI24932731700..2732620 [+], 921conserved hypothetical protein
80rimI2732932..2733378 [-], 447ribosomal-protein-alanine acetyltransferase
81holD2733347..2733757 [-], 411DNA polymerase III, psi subunit
82rsmC2733887..2734900 [+], 1014ribosomal RNA small subunit methyltransferase C
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins71Fasta
(1) Flannery EL; Antczak SM; Mobley HL (2011). Self-Transmissibility of the Integrative and Conjugative Element ICEPm1 between Clinical Isolates Requires a Functional Integrase, Relaxase, and Type IV Secretion System. J Bacteriol. 193(16):4104-12. [PudMed:21665966] experimental
(2) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
(3) Flannery EL; Mody L; Mobley HL (2009). Identification of a modular pathogenicity island that is widespread among urease-producing uropathogens and shares features with a diverse group of mobile elements. Infect Immun. 77(11):4887-94. [PudMed:19687197] experimental
 
experimental experimental literature
in_silico in silico analysis literature