ICEberg
I. Information of ICE
ICEberg ID4
Name CTnERL This ICE is derived from experimental literature
FamilyCTnDOT/ERL
OrganismBacteroides fragilis
Size (bp)~52 kb
GC content [Genome] (%)-
Insertion siteFew sites
Function-
Species that ICE can be transferred toBacteroides spp.
Nucleotide Sequence-
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The Interaction Network among ICE/IME/CIME


Detailed Informatioin of the Interaction Network
# ICE  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1CTnERL ermF region  [IME] experimentalin trans Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron 11472924
2CTnERL NBU1  [IME] experimentalin trans Bacteroides uniformis Bacteroides thetaiotaomicron 5482; Escherichia coli 8407835; 7608064
3CTnERL NBU2  [IME] experimentalin trans Bacteroides fragilis; Bacteroides uniformis; Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron 5482; Bacteroides uniformis; Escherichia coli 8407835; 7608064; 10852890

experimental This is an interactioin derived from experimental literature

 

The gene information of CTnERL is not available.
ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Whittle G; Hamburger N; Shoemaker NB; Salyers AA (2006). A bacteroides conjugative transposon, CTnERL, can transfer a portion of itself by conjugation without excising from the chromosome. J Bacteriol. 188(3):1169-74. [PudMed:16428422] experimental
(2) Bonheyo GT; Hund BD; Shoemaker NB; Salyers AA (2001). Transfer region of a Bacteroides conjugative transposon contains regulatory as well as structural genes. Plasmid. 46(3):202-9. [PudMed:11735369] experimental
(3) Valentine PJ; Shoemaker NB; Salyers AA (1988). Mobilization of Bacteroides plasmids by Bacteroides conjugal elements. J Bacteriol. 170(3):1319-24. [PudMed:3343220] experimental
(4) Bedzyk LA; Shoemaker NB; Young KE; Salyers AA (1992). Insertion and excision of Bacteroides conjugative chromosomal elements. J Bacteriol. 174(1):166-72. [PudMed:1309516] experimental
 
experimental experimental literature