ICEberg
I. Information of ICE
ICEberg ID397
Name ICEHpyP12-2 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismHelicobacter pylori P12
Size (bp)30635
GC content [Genome] (%)32.88[38.81]
Insertion sitetype II R-M system methyltransferase (HPP12_1319)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001217 (complete ICE sequence in this genome)
Replicon chromosome (1673813 bp, BioProject:32291) [NC_011498]
Genome coordinates1394776..1425410 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEHpyP12-2 is not available.



The graph information of ICEHpyP12-2 components from CP001217
Complete gene list of ICEHpyP12-2 from CP001217
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1HPP12_13141389854..1390261 [-], 408type II R-M system restriction endonuclease
2HPP12_13151390306..1390851 [-], 546hypothetical protein
3HPP12_13161390860..1390988 [-], 129hypothetical protein
4HPP12_13171391041..1391214 [-], 174hypothetical protein
5HPP12_13181391189..1391668 [-], 480hypothetical protein
6HPP12_13201394833..1395621 [+], 789hypothetical protein
7HPP12_13211395624..1395854 [+], 231hypothetical protein
8HPP12_13221395847..1396335 [+], 489hypothetical protein
9virB2-21396323..1396607 [+], 285VirB2 type IV secretion proteinVirB2, T4SS component 
10virB3-21396619..1396882 [+], 264VirB3 type IV secretion proteinVirB3, T4SS component 
11HPP12_13251396894..1397130 [+], 237hypothetical protein
12virB4-21397130..1399706 [+], 2577VirB4 type IV secretion ATPaseVirB4, T4SS component 
13virB7-21399703..1399843 [+], 141VirB7 type IV secretion proteinVirB7, T4SS component 
14virB8-21399836..1400972 [+], 1137VirB8 type IV secretion proteinVirB8, T4SS component 
15virB9-21400969..1402624 [+], 1656VirB9 type IV secretion proteinVirB9, T4SS component 
16virB10-21402591..1403829 [+], 1239VirB10 type IV secretion proteinVirB10, T4SS component 
17HPP12_13311403813..1405597 [+], 1785hypothetical protein
18HPP12_13321405501..1406055 [+], 555hypothetical protein
19HPP12_13331406068..1407030 [+], 963hypothetical protein
20HPP12_13341407047..1407322 [+], 276hypothetical protein
21virB11-31407327..1408271 [+], 945VirB11 type IV secretion ATPaseVirB11, T4SS component 
22HPP12_13361408268..1408786 [+], 519hypothetical protein
23virD4-21408783..1411026 [+], 2244VirD4 coupling proteinVirD4, T4SS component 
24HPP12_13391413163..1413633 [+], 471hypothetical protein
25HPP12_13401413603..1414406 [+], 804hypothetical protein
26HPP12_13411414480..1415145 [-], 666hypothetical protein
27HPP12_13421415123..1415401 [-], 279hypothetical protein
28HPP12_13431415334..1415765 [-], 432hypothetical protein
29HPP12_13441415750..1416160 [+], 411hypothetical protein
30HPP12_13451416165..1416794 [-], 630hypothetical protein
31HPP12_13461416897..1417178 [-], 282hypothetical protein
32HPP12_13471417399..1417788 [+], 390hypothetical protein
33HPP12_13481417796..1418086 [+], 291hypothetical protein
34HPP12_13491418215..1418466 [+], 252hypothetical protein
35HPP12_13501418394..1419248 [+], 855hypothetical protein
36HPP12_13521421131..1421259 [+], 129hypothetical protein
37virD2-21421785..1423818 [-], 2034relaxase
38nadC1425436..1426257 [-], 822nicotinate-nucleotide pyrophosphorylase
39nadA1426257..1427267 [-], 1011quinolinate synthetase A
40psd1427257..1428060 [-], 804phosphatidylserine decarboxylase proenzyme
41HPP12_13571428054..1428560 [-], 507hypothetical protein
42HPP12_13581428573..1429124 [-], 552hypothetical protein
43ubiA1429060..1429944 [-], 8854-hydroxybenzoate octaprenyltransferase
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
(1) Fischer W; Windhager L; Rohrer S; Zeiller M; Karnholz A; Hoffmann R; Zimmer R; Haas R (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PudMed:20478826]