ICEberg
I. Information of ICE
ICEberg ID394
Name Tn6098 This ICE is derived from experimental literature
FamilyUnclassified
OrganismLactococcus lactis subsp. lactis KF147
Size (bp)51355
GC content [Genome] (%)34.99[34.91]
Insertion siteTTATACCATAATTAC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001834 (complete ICE sequence in this genome)
Replicon chromosome (2598144 bp, BioProject:42831) [NC_013656]
Genome coordinates2295682..2347036 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of Tn6098 is not available.



The graph information of Tn6098 components from CP001834
Complete gene list of Tn6098 from CP001834
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1yvcA2291721..2292314 [-], 594Hypothetical protein
2snf2292530..2295634 [-], 3105DNA/RNA helicase, SWF/SNF family
3LLKF_22292295829..2297100 [-], 1272Integrase, conjugative transposon Tn5276
4LLKF_22302297161..2297370 [-], 210Excisionase, conjugative transposon Tn5276
5ardA2297429..2297920 [-], 492Conjugative transposon antirestriction protein
6LLKF_22322297944..2298438 [-], 495Hypothetical protein
7LLKF_22332298533..2299597 [-], 1065N-acetylmuramoyl-L-alanine amidase, CHAP domain familyPrgK, T4SS component 
8LLKF_22342299613..2301658 [-], 2046Hypothetical protein
9LLKF_22352301659..2304226 [-], 2568Conjugal transfer proteinYddE, T4SS component 
10LLKF_22362304226..2304591 [-], 366Hypothetical proteinYddD, T4SS component 
11LLKF_22372304600..2304833 [-], 234Hypothetical protein
12LLKF_22382304839..2306107 [-], 1269Hypothetical protein
13LLKF_22392306111..2306311 [-], 201Hypothetical protein
14LLKF_22402306681..2306941 [-], 261Hypothetical protein
15LLKF_22412307055..2307315 [-], 261Hypothetical protein
16LLKF_22422307348..2307614 [-], 267Hypothetical protein
17LLKF_22432307639..2308916 [-], 1278Replication initiation factor
18LLKF_22442309297..2310916 [-], 1620DNA segregation ATPase, FtsK/SpoIIIE familyYdcQ, T4SS component 
19LLKF_22452310926..2311432 [-], 507Hypothetical protein
20LLKF_22462311435..2311770 [-], 336Hypothetical protein
21LLKF_22472311774..2311896 [-], 123Hypothetical protein
22LLKF_22482311955..2312146 [-], 192Hypothetical protein
23LLKF_22492312285..2312419 [-], 135Hypothetical protein
24LLKF_22502312416..2312682 [-], 267Hypothetical protein
25LLKF_22512312819..2313370 [-], 552Hypothetical protein
26LLKF_22522313480..2313800 [-], 321Transcriptional regulator
27LLKF_22532314169..2314327 [+], 159Hypothetical protein
28LLKF_22542314496..2314840 [+], 345Transcriptional regulator
29LLKF_22552314818..2315900 [+], 1083Hypothetical protein
30LLKF_22562315964..2316416 [+], 453IS3/IS911transposase, N-terminal fragment
31LLKF_22572316470..2316754 [+], 285-
32LLKF_22582316702..2317118 [+], 417-
33sucP2317224..2318669 [-], 1446Sucrose phosphorylase
34LLKF_22602318756..2319583 [-], 828Sugar ABC transporter, permease protein
35LLKF_22612319596..2320465 [-], 870Sugar ABC transporter, permease protein
36LLKF_22622320566..2321810 [-], 1245Sugar ABC transporter, sugar-binding protein
37LLKF_22632321960..2322829 [+], 870Transcriptional regulator, AraC family
38purH2322901..2324445 [-], 1545phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
39galT2324570..2326054 [-], 1485Galactose 1-phosphate uridylyltransferase
40galK2326051..2327241 [-], 1191Galactokinase
41aga2327238..2329454 [-], 2217Alpha-galactosidase
42galR2329585..2330622 [-], 1038Transcriptional regulator, LacI family
43fbp2330747..2332669 [-], 1923Fructose 1,6-bisphosphatase
44LLKF_22702332809..2333120 [+], 312Hypothetical protein, N-terminal fragment
45tnp2333148..2333432 [+], 285-
46LLKF_22722333380..2333796 [+], 417-
47LLKF_22732335306..2336160 [-], 855IS981 transposase BIntegrase 
48LLKF_22742336157..2336417 [-], 261IS981 transposase A
49LLKF_22752336808..2337641 [+], 834Hypothetical protein
50LLKF_22762337802..2338656 [-], 855IS981 transposase BIntegrase 
51LLKF_22772338653..2338913 [-], 261IS981 transposase A
52LLKF_22782339521..2340483 [+], 963D-Isomer specific 2-hydroxyacid dehydrogenase, NAD-dependent
53ceo2341013..2341936 [-], 924N5-(Carboxyethyl)ornithine synthase
54corA2341975..2342925 [-], 951Mg2+ and Co2+ transporter, CorA family
55ymgG2343050..2343601 [-], 552General stress protein, Gls24 family
56ymgH2343622..2343810 [-], 189Hypothetical protein
57ymgI2343820..2344380 [-], 561Hypothetical protein
58ymgJ2344410..2344649 [-], 240Hypothetical protein
59cspB2345164..2345364 [-], 201cold-shock protein
60cspC2345642..2345842 [-], 201cold-shock protein
61cspA2345973..2346173 [-], 201cold-shock protein
62yvcC2347228..2348238 [-], 1011-
63yvcC2348252..2348527 [-], 276-
64poxL2348944..2350647 [-], 1704Pyruvate oxidase
65yvdA2350844..2351830 [-], 987Beta-lactamase family protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins55Fasta
(1) Machielsen R; Siezen RJ; van Hijum SA; van Hylckama Vlieg JE (2011). Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol. 77(2):555-63. [PudMed:21115709] experimental
 
experimental experimental literature