ICEberg
I. Information of ICE
ICEberg ID391
Name ICEBvu8482-2 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismBacteroides vulgatus ATCC 8482
Size (bp)89774
GC content [Genome] (%)42.89
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000139 (complete ICE sequence in this genome)
Replicon chromosome (5163189 bp, BioProject:13378) [NC_009614]
Genome coordinates1962094..2051867 
Putative oriT region -
Putative relaxase coordinates: 2047580..2048827; Locus tag: BVU_1556;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICEBvu8482-2 is not available.



The graph information of ICEBvu8482-2 components from CP000139
Complete gene list of ICEBvu8482-2 from CP000139
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1BVU_14771958531..1959019 [+], 489hypothetical protein
2BVU_14781959097..1961955 [+], 2859conserved hypothetical protein
3BVU_14791962094..1962750 [+], 657hypothetical protein
4BVU_14801962695..1963591 [+], 897hypothetical protein
5BVU_14811963599..1964441 [+], 843capsular polysaccharide biosynthesis protein D
6BVU_14821964548..1964925 [+], 378hypothetical protein
7BVU_14831964931..1965995 [-], 1065putative peptidase/deacetylase
8BVU_14841966209..1968014 [+], 1806putative long-chain-fatty-acid--CoA ligase
9BVU_14851968072..1969187 [+], 1116peptide chain release factor RF-2
10BVU_14861969482..1969952 [+], 471conserved hypothetical protein
11BVU_14871970042..1972516 [+], 2475putative TonB-dependent receptor
12BVU_14881972685..1973188 [+], 504RNA polymerase ECF-type sigma factor
13BVU_14891973269..1973655 [-], 387conserved hypothetical protein
14BVU_14901973751..1975115 [+], 1365Na+-dependent transporter
15BVU_14911975123..1976025 [+], 903conserved hypothetical protein
16BVU_14921976170..1977528 [+], 1359putative transposase
17BVU_14931977712..1979130 [-], 1419alkaline phosphatase III precursor
18BVU_14941979434..1979934 [+], 501conserved hypothetical protein
19BVU_14951980542..1982197 [+], 1656transposase
20BVU_14961982491..1983687 [-], 1197conserved hypothetical protein
21BVU_14971983700..1984047 [-], 348excisionase
22BVU_14981984092..1985477 [-], 1386conserved hypothetical protein
23BVU_14991985555..1986394 [-], 840putative transcriptional regulator
24BVU_15001986505..1987101 [+], 597galactoside O-acetyltransferase
25BVU_15011987262..1987744 [+], 483phosphoglycolate phosphatase
26BVU_15021988016..1988267 [+], 252conserved hypothetical protein
27BVU_15031988890..1991292 [-], 2403conserved hypothetical protein
28BVU_15041991306..1992265 [-], 960putative ATPase
29BVU_15051992589..1993452 [+], 864DNA primase
30BVU_15061993549..1994397 [-], 849conserved hypothetical protein
31BVU_15071994745..1996043 [+], 1299predicted ATPase
32BVU_15081996040..1998910 [+], 2871probable helicase
33BVU_15091999130..2000209 [-], 1080hypothetical protein
34BVU_15102000226..2000552 [-], 327hypothetical protein
35BVU_15112000651..2001001 [+], 351hypothetical protein
36BVU_15122001012..2002016 [+], 1005transposase
37BVU_15132002132..2002506 [+], 375hypothetical protein
38BVU_15142002684..2002983 [-], 300conserved hypothetical protein
39BVU_15152002991..2003284 [-], 294conserved hypothetical protein
40BVU_15162003778..2004038 [+], 261conserved hypothetical protein
41BVU_15172004095..2004799 [+], 705conserved hypothetical protein
42BVU_15182004883..2005674 [-], 792ThiF family protein, ubiquitin-activating enzyme
43BVU_15192005671..2006372 [-], 702conserved hypothetical protein
44BVU_15202006383..2007492 [-], 1110conserved hypothetical protein
45BVU_15212007529..2007750 [-], 222conserved hypothetical protein
46BVU_15222007773..2008828 [-], 1056conserved hypothetical protein
47BVU_15232009590..2011362 [-], 1773DNA topoisomerase I
48BVU_15242011435..2011710 [-], 276conserved hypothetical protein
49BVU_15252011765..2013603 [-], 1839conserved hypothetical protein
50BVU_15262013972..2014262 [-], 291hypothetical protein
51BVU_15272014461..2015684 [+], 1224integraseIntegrase 
52BVU_15282015942..2016166 [+], 225hypothetical protein
53BVU_15292016260..2016727 [+], 468putative transcriptional regulator
54BVU_15302016752..2017858 [+], 1107undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
55BVU_15312017885..2018679 [+], 795polysaccharide export protein, BexD/CtrA/VexA family
56BVU_15322018721..2021087 [+], 2367tyrosine-protein kinase ptk
57BVU_15332021285..2021851 [+], 567capsular polysaccharide biosythesis protein, putative
58BVU_15342021933..2023138 [+], 1206putative UDP-ManNAc dehydrogenase
59BVU_15352023183..2023434 [+], 252hypothetical protein
60BVU_15362023957..2025300 [+], 1344putative LPS biosynthesis related polysaccharide transporter/flippase
61BVU_15372025288..2026490 [+], 1203hypothetical protein
62BVU_15382026497..2027666 [+], 1170putative glycosyltransferase
63BVU_15392027672..2028745 [+], 1074putative dehydratase
64BVU_15402028920..2030074 [+], 1155putative epimerase/dehydratase
65BVU_15412030081..2030479 [+], 399conserved hypothetical protein
66BVU_15422030486..2031667 [+], 1182putative UDP-N-acetylglucosamine 2-epimerase
67BVU_15432031699..2032880 [+], 1182hypothetical protein
68BVU_15442032950..2033288 [+], 339hypothetical protein
69BVU_15452033293..2033673 [+], 381putative serine transferase family protein
70BVU_15462034265..2035458 [+], 1194conserved hypothetical protein
71BVU_15472035471..2036169 [+], 699glycosyltransferase family 26
72BVU_15482036181..2037341 [+], 1161putative UDP-GlcNAc 2-epimerase
73BVU_15492037432..2037698 [-], 267hypothetical protein
74BVU_15502038237..2038545 [+], 309hypothetical protein
75BVU_15512038570..2040831 [+], 2262helicase, putative
76BVU_15522041149..2043536 [+], 2388two-component system sensor histidine kinase
77BVU_15532043472..2044785 [+], 1314putative two-component system response regulator
78BVU_15542044791..2045207 [-], 417conserved hypothetical protein
79BVU_15552045507..2047543 [-], 2037putative mobilization proteinT4CP 
80BVU_15562047580..2048827 [-], 1248putative mobilization proteinRelaxase, MOBP Family
81BVU_15572048812..2049234 [-], 423conserved hypothetical protein
82BVU_15582049959..2050753 [+], 795conserved protein found in conjugate transposon
83BVU_15592050762..2051211 [+], 450conserved hypothetical protein
84BVU_15602051199..2051867 [+], 669conserved hypothetical protein
85BVU_15612052129..2052431 [+], 303conserved protein found in conjugate transposon
86BVU_15622052437..2052763 [+], 327conserved protein found in conjugate transposon
87BVU_15632052760..2055294 [+], 2535conserved protein found in conjugate transposon
88BVU_15642055291..2055647 [+], 357conserved protein found in conjugate transposon
89BVU_15652055644..2056273 [+], 630conserved protein found in conjugate transposon
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins82Fasta
(1) Xu J; Mahowald MA; Ley RE; Lozupone CA; Hamady M; Martens EC; Henrissat B; Coutinho PM; Minx P; Latreille P; Cordum H; Van Brunt A; Kim K; Fulton RS; Fulton LA; Clifton SW; Wilson RK; Knight RD; Gordon JI (2007). Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol. 5(7):e156. [PudMed:17579514] in_silico
 
in_silico in silico analysis literature