ICEberg
I. Information of ICE
ICEberg ID390
Name ICEBvu8482-1 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismBacteroides vulgatus ATCC 8482
Size (bp)76776
GC content [Genome] (%)44.29
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000139 (complete ICE sequence in this genome)
Replicon chromosome (5163189 bp, BioProject:13378) [NC_009614]
Genome coordinates899681..976456 
Putative oriT region -
Putative relaxase coordinates: 950812..952059; Locus tag: BVU_0678;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICEBvu8482-1 is not available.



The graph information of ICEBvu8482-1 components from CP000139
Complete gene list of ICEBvu8482-1 from CP000139
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1BVU_0623895991..899392 [-], 3402putative outer membrane protein, probably involved in nutrient binding
2BVU_0624899681..901993 [-], 2313glycoside hydrolase family 92
3BVU_0625902023..904305 [-], 2283glycoside hydrolase family 92
4BVU_0626904323..905315 [-], 993putative anti-sigma factor
5BVU_0627905344..905919 [-], 576RNA polymerase ECF-type sigma factor
6BVU_0628906124..908346 [-], 2223glycoside hydrolase family 92
7BVU_0629908440..909135 [-], 696hypothetical protein
8BVU_0630909295..909573 [+], 279conserved hypothetical protein
9BVU_0631909582..910397 [+], 816transcriptional regulator
10BVU_0632910471..910878 [+], 408putative general stress protein
11BVU_0633911107..911415 [+], 309conserved hypothetical protein
12BVU_0634911433..913661 [+], 2229ATP-dependent Clp protease, ATP-binding subunit ClpA
13BVU_0635913757..914410 [+], 654Leu/Phe-tRNA-protein transferase
14BVU_0636914551..915390 [+], 840hypothetical protein
15BVU_0637915605..916897 [+], 1293BexA, putative cation effux pump
16BVU_0638917012..917596 [+], 585conserved hypothetical protein
17BVU_0639917614..918384 [-], 771transcriptional regulator
18BVU_0640918435..920042 [-], 1608glycoside hydrolase family 27
19BVU_0643920743..921141 [-], 399hypothetical protein
20BVU_0644921126..922361 [+], 1236transposaseIntegrase 
21BVU_0645922442..922636 [-], 195hypothetical protein
22BVU_0646922956..924083 [+], 1128conserved hypothetical protein
23BVU_0647924087..924980 [+], 894conserved hypothetical protein
24BVU_0648925056..925421 [+], 366hypothetical protein
25BVU_0649925418..926398 [+], 981conserved hypothetical protein
26BVU_0650926441..926920 [+], 480conserved hypothetical protein
27BVU_0651927015..927305 [+], 291conserved hypothetical protein
28BVU_0652927455..927850 [-], 396hypothetical protein
29BVU_0653927852..928658 [+], 807conserved hypothetical protein
30BVU_0654928660..929418 [+], 759type I restriction enzyme, M subunit
31BVU_0655929437..930666 [+], 1230hypothetical protein
32BVU_0656930679..931560 [+], 882conserved hypothetical protein
33BVU_0657931587..932741 [+], 1155conserved hypothetical protein
34BVU_0658932804..933715 [+], 912hypothetical protein
35BVU_0659934077..934556 [-], 480glycoside hydrolase family 24
36BVU_0660934553..935011 [-], 459conserved protein found in conjugate transposon
37BVU_0661935032..935619 [-], 588conserved protein found in conjugate transposon
38BVU_0662935616..936530 [-], 915conserved protein found in conjugate transposon
39BVU_0663936581..937888 [-], 1308conserved protein found in conjugate transposon
40BVU_0664937839..938141 [-], 303conserved hypothetical protein
41BVU_0665938138..938761 [-], 624conserved protein found in conjugate transposon
42BVU_0666938884..939897 [-], 1014conserved protein found in conjugate transposon
43BVU_0667939900..940529 [-], 630conserved protein found in conjugate transposon
44BVU_0668940526..940894 [-], 369conserved protein found in conjugate transposon
45BVU_0669940891..943416 [-], 2526conserved protein found in conjugate transposon
46BVU_0670943413..943742 [-], 330conserved protein found in conjugate transposon
47BVU_0671944349..945782 [+], 1434conserved hypothetical protein
48BVU_0672945769..946758 [+], 990conserved hypothetical protein
49BVU_0673946755..947660 [+], 906hypothetical protein
50BVU_0674947775..948440 [-], 666conserved hypothetical protein
51BVU_0675948428..948877 [-], 450conserved hypothetical protein
52BVU_0676948886..949680 [-], 795conserved protein found in conjugate transposon
53BVU_0677950405..950827 [+], 423conserved hypothetical protein
54BVU_0678950812..952059 [+], 1248putative mobilization proteinRelaxase, MOBP Family
55BVU_0679952096..954132 [+], 2037putative mobilization proteinT4CP 
56BVU_0680954432..954848 [+], 417conserved hypothetical protein
57BVU_0681954854..956167 [-], 1314putative two-component system response regulator
58BVU_0682956103..958490 [-], 2388two-component system sensor histidine kinase
59BVU_0683958808..961069 [-], 2262helicase, putative
60BVU_0684961094..961402 [-], 309hypothetical protein
61BVU_0685961941..962207 [+], 267hypothetical protein
62BVU_0686962298..963458 [-], 1161putative UDP-GlcNAc 2-epimerase
63BVU_0687963470..964168 [-], 699glycosyltransferase family 26
64BVU_0688964181..965374 [-], 1194conserved hypothetical protein
65BVU_0689965966..966346 [-], 381putative serine acetyltransferase family protein
66BVU_0690966351..966689 [-], 339hypothetical protein
67BVU_0691966759..967940 [-], 1182hypothetical protein
68BVU_0692967972..969153 [-], 1182putative UDP-N-acetylglucosamine 2-epimerase
69BVU_0693969160..969558 [-], 399conserved hypothetical protein
70BVU_0694969565..970719 [-], 1155putative epimerase/dehydratase, involved in capsular polysaccharide biosynthesis
71BVU_0695970894..971967 [-], 1074putative dehydratase
72BVU_0696971973..973142 [-], 1170putative glycosyltransferase
73BVU_0697973149..974351 [-], 1203hypothetical protein
74BVU_0698974339..975682 [-], 1344putative LPS biosynthesis related polysaccharide transporter/flippase
75BVU_0699976205..976456 [-], 252hypothetical protein
76BVU_0700976501..977706 [-], 1206putative UDP-ManNAc dehydrogenase
77BVU_0701977788..978492 [-], 705capsular polysaccharide biosythesis protein, putative
78BVU_0702978506..980884 [-], 2379tyrosine-protein kinase ptk
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins74Fasta
(1) Xu J; Mahowald MA; Ley RE; Lozupone CA; Hamady M; Martens EC; Henrissat B; Coutinho PM; Minx P; Latreille P; Cordum H; Van Brunt A; Kim K; Fulton RS; Fulton LA; Clifton SW; Wilson RK; Knight RD; Gordon JI (2007). Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol. 5(7):e156. [PudMed:17579514] in_silico
 
in_silico in silico analysis literature