ICEberg
I. Information of ICE
ICEberg ID389
Name CTnPg3 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)17585
GC content [Genome] (%)39.09[48.36]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, BioProject:19051) [NC_010729]
Genome coordinates1021623..1039207 
Putative oriT region -
Putative relaxase coordinates: 1029413..1030354; Locus tag: PGN_0925;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of CTnPg3 is not available.



The graph information of CTnPg3 components from AP009380
Complete gene list of CTnPg3 from AP009380
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PGN_09151016793..1018340 [-], 1548conserved hypothetical protein
2dnaK1018923..1020845 [+], 1923molecular chaperone DnaK
3PGN_09171021623..1022885 [+], 1263tyrosine type site-specific recombinaseIntegrase 
4PGN_09181023531..1024616 [+], 1086transposase in ISPg1
5PGN_09191025094..1025738 [-], 645hypothetical protein
6PGN_09201026238..1026375 [+], 138putative partial excisionase
7PGN_09211026426..1026593 [+], 168hypothetical protein
8PGN_09221026608..1027813 [+], 1206conserved hypothetical protein
9PGN_09231028044..1028931 [+], 888putative DNA primase
10PGN_09241029061..1029423 [+], 363mobilization protein
11PGN_09251029413..1030354 [+], 942putative mobilization proteinRelaxase, MOBP Family
12PGN_09261030380..1031102 [+], 723conserved hypothetical protein
13PGN_09271031232..1031435 [+], 204conserved hypothetical protein
14PGN_09281031507..1032715 [+], 1209conserved hypothetical protein
15PGN_09291032705..1034606 [+], 1902conserved hypothetical proteinT4CP 
16PGN_09301034802..1035848 [+], 1047hypothetical protein
17PGN_09311035904..1036683 [+], 780conserved hypothetical protein
18PGN_09321037241..1037696 [+], 456probable GCN5-related N-acetyltransferase
19PGN_09331037750..1039207 [+], 1458probable transcriptional regulator
20PGN_09341039361..1040263 [+], 903transposase in ISPg3
21PGN_09351040509..1042389 [+], 1881conserved hypothetical protein
22PGN_09361042630..1043583 [+], 954putative glycerate dehydrogenase
23PGN_09371043701..1043811 [+], 111hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]