ICEberg
I. Information of ICE
ICEberg ID388
Name CTnPg2 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)27193
GC content [Genome] (%)40.57[48.36]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, BioProject:19051) [NC_010729]
Genome coordinates627916..655108 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of CTnPg2 is not available.



The graph information of CTnPg2 components from AP009380
Complete gene list of CTnPg2 from AP009380
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PGN_0574624175..624516 [+], 342conserved hypothetical protein
2PGN_0575624688..625749 [-], 1062transposase in ISPg1
3PGN_0576625842..625943 [+], 102hypothetical protein
4PGN_0577626732..627817 [+], 1086transposase in ISPg1
5PGN_0578627916..628137 [-], 222conserved hypothetical protein found in conjugate transposon
6PGN_0579628159..629265 [+], 1107conserved hypothetical proteinT4CP 
7PGN_0580629353..634965 [+], 5613conserved hypothetical protein
8PGN_0581635151..636635 [+], 1485conserved hypothetical protein
9PGN_0582636731..638812 [+], 2082DNA topoisomerase I
10PGN_0583638954..640594 [+], 1641conserved hypothetical protein
11PGN_0584640869..642197 [-], 1329conserved hypothetical protein
12PGN_0585642231..643133 [+], 903transposase in ISPg3
13PGN_0586643172..643486 [+], 315conserved hypothetical protein
14PGN_0587643570..644655 [+], 1086transposase in ISPg1
15PGN_0588644756..645304 [+], 549conserved hypothetical protein
16PGN_0589645609..645830 [+], 222conserved hypothetical protein
17PGN_0590646047..647105 [+], 1059putative Fic family protein
18PGN_0591647136..648518 [-], 1383conserved hypothetical protein
19traQ648638..649075 [-], 438putative conserved protein found in conjugate transposon TraQ
20traO649095..649679 [-], 585putative conserved protein found in conjugate transposon TraO
21traN649684..650619 [-], 936conserved protein found in conjugate transposon TraN
22traM650693..652054 [-], 1362putative conserved protein found in conjugate transposon TraM
23PGN_0596652051..652314 [-], 264conserved hypothetical protein found in conjugate transposon
24traK652318..652941 [-], 624putative conserved protein found in conjugate transposon TraK
25traJ652959..653945 [-], 987conserved transmembrane protein found in conjugate transposon TraJ
26traI653966..654589 [-], 624putative conserved protein found in conjugate transposon TraITrbJ, T4SS component 
27PGN_0600654641..655108 [-], 468conserved hypothetical proteinTraC_F, T4SS component 
28PGN_0601655186..655605 [-], 420conserved hypothetical protein
29PGN_0602655769..656854 [+], 1086transposase in ISPg1
30PGN_0603657387..657560 [-], 174hypothetical protein
31PGN_0604657990..658472 [+], 483ferritin
32PGN_0605658720..659805 [-], 1086transposase in ISPg1
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins23Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]