ICEberg
I. Information of ICE
ICEberg ID387
Name CTnPg1-b This is a predicted ICE derived from literature
FamilyUnclassified
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)10348
GC content [Genome] (%)46.24[48.36]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, BioProject:19051) [NC_010729]
Genome coordinates1429021..1439368 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of CTnPg1-b is not available.



The graph information of CTnPg1-b components from AP009380
Complete gene list of CTnPg1-b from AP009380
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PGN_12761425416..1426501 [-], 1086transposase in ISPg1
2PGN_12771426697..1426867 [+], 171conserved hypothetical protein
3PGN_12781427362..1428150 [+], 789partial transposase in ISPg3
4PGN_12791428190..1428510 [+], 321partial transposase in ISPg3
5PGN_12801428497..1428928 [-], 432partial transposase in ISPg1
6traM1429021..1430160 [+], 1140putative conserved protein found in conjugate transposon TraM
7traN1430199..1431119 [+], 921conserved protein found in conjugate transposon TraN
8traO1431151..1431705 [+], 555conserved protein found in conjugate transposon TraO
9traP1431705..1432559 [+], 855putative DNA primase involved in conjugation TraP
10traQ1432584..1433045 [+], 462conserved protein found in conjugate transposon TraQ
11PGN_12861433029..1433544 [+], 516probable lysozyme
12PGN_12871433605..1434009 [-], 405conserved hypothetical protein
13PGN_12881434011..1435237 [-], 1227conserved hypothetical protein
14PGN_12891435495..1435725 [-], 231conserved hypothetical protein
15PGN_12901435730..1435984 [-], 255conserved hypothetical protein
16PGN_12911436011..1437285 [-], 1275conserved hypothetical protein related to phage
17PGN_12921437302..1437832 [-], 531probable anti-restriction protein
18PGN_12931437854..1438270 [-], 417conserved hypothetical protein
19PGN_12941438283..1438501 [-], 219conserved hypothetical protein
20PGN_12951438514..1438780 [-], 267hypothetical protein
21PGN_12961439480..1441498 [-], 2019putative OmpA family protein
22PGN_12971441520..1442113 [-], 594conserved hypothetical protein
23PGN_12981442133..1442552 [-], 420conserved hypothetical protein
24PGN_12991442549..1442665 [-], 117hypothetical protein
25PGN_13001442769..1443455 [-], 687probable transcriptional regulator
26PGN_13011443472..1443828 [-], 357probable transcriptional regulator
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins15Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]