ICEberg
I. Information of ICE
ICEberg ID381
Name ICEDda3937-1 This is a putative ICE identified in this study by Blast
FamilyUnclassified
OrganismDickeya dadantii 3937
Size (bp)74592
GC content [Genome] (%)52.08[56.3]
Insertion sitetRNA-asn(Dda3937_04292)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002038 (complete ICE sequence in this genome)
Replicon[NC_014500]
Genome coordinates3126510..3201101 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEDda3937-1 is not available.



The graph information of ICEDda3937-1 components from CP002038
Complete gene list of ICEDda3937-1 from CP002038
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1uvrY3122038..3122694 [-], 657Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS)
2Dda3937_046433122809..3123174 [+], 366hypothetical protein
3yecF3123345..3123569 [+], 225Putative cytoplasmic protein
4cycA3124304..3125707 [+], 1404D-serine/D-alanine/glycine transporter
5Dda3937_046443125455..3125715 [+], 261hypothetical protein
6Dda3937_039633125774..3126049 [-], 276Nitrogen assimilation control protein
7Dda3937_000803126671..3127954 [+], 1284IntegraseIntegrase 
8Dda3937_000793128109..3128420 [-], 312hypothetical proteinTraF, T4SS component 
9Dda3937_001003129435..3130361 [+], 927hypothetical protein
10Dda3937_046453130907..3131407 [-], 501hypothetical protein
11Dda3937_027733131418..3135728 [-], 4311Rhs-family protein
12Dda3937_027723135740..3136147 [-], 408hypothetical protein
13Dda3937_027713136161..3138014 [-], 1854Putative Rhs accessory genetic element
14Dda3937_027703138127..3138645 [-], 519Hcp
15Dda3937_027693138760..3138870 [-], 111hypothetical protein
16Dda3937_046463139168..3139506 [+], 339hypothetical protein
17Dda3937_027683139329..3139574 [+], 246hypothetical protein
18Dda3937_027673139904..3140215 [-], 312Putative regulator for maltose metabolism
19Dda3937_027663140296..3140550 [+], 255DNA-binding protein
20Dda3937_027653140638..3140886 [+], 249DNA-binding protein
21Dda3937_027643140846..3141106 [-], 261hypothetical protein
22Dda3937_027633141185..3141490 [-], 306Putative regulator for maltose metabolism
23Dda3937_027623141606..3141884 [+], 279Putative transcriptional regulator
24Dda3937_027613141998..3142255 [+], 258Putative transcriptional regulator
25Dda3937_046473142335..3142550 [+], 216hypothetical protein
26Dda3937_046483142835..3143077 [+], 243hypothetical protein
27alpA3142932..3143126 [+], 195DNA-binding protein
28Dda3937_027593143143..3143727 [+], 585hypothetical protein
29Dda3937_027583143813..3144094 [-], 282hypothetical protein
30Dda3937_027573144145..3146025 [+], 1881hypothetical protein
31Dda3937_046493146131..3146412 [+], 282hypothetical protein
32Dda3937_027563146655..3146951 [+], 297putative ATP/GTP-binding protein remnant
33virB13146982..3147668 [+], 687VirB1VirB1, T4SS component 
34virB23147682..3147963 [+], 282Major pilus subunit of type IV secretion complex (VirB2)VirB2, T4SS component 
35virB43147941..3150721 [+], 2781ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB4)VirB4, T4SS component 
36virB53150747..3151463 [+], 717Minor pilin of type IV secretion complex (VirB5)VirB5, T4SS component 
37Dda3937_027513151432..3151698 [+], 267hypothetical protein
38virB63151710..3152738 [+], 1029Integral inner membrane protein of type IV secretion complex (VirB6)VirB6, T4SS component 
39virB73152826..3152966 [+], 141TriF proteinVirB7, T4SS component 
40virB83152959..3153642 [+], 684Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8)VirB8, T4SS component 
41virB93153639..3154532 [+], 894VirB9VirB9, T4SS component 
42virB103154529..3155737 [+], 1209Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10)VirB10, T4SS component 
43virB113155727..3156743 [+], 1017ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11)VirB11, T4SS component 
44kikA3156784..3157086 [+], 303IncN plasmid KikA protein
45Dda3937_046503157169..3157519 [+], 351hypothetical protein
46Dda3937_042933157741..3159546 [+], 1806MobB proteinVirD4, T4SS component 
47mobC3159555..3160301 [+], 747MobC-like protein
48Dda3937_041673160534..3161811 [+], 1278ISEch11 transposase
49Dda3937_041683161932..3162837 [-], 906hypothetical protein
50Dda3937_041693163024..3163680 [-], 657hypothetical protein
51Dda3937_043473163984..3164427 [-], 444hypothetical protein
52Dda3937_043483164636..3164929 [-], 294hypothetical protein
53Dda3937_041703164896..3165183 [-], 288hypothetical protein
54Dda3937_043493165251..3165547 [-], 297hypothetical protein
55Dda3937_041713165550..3165864 [-], 315Putative toxin of gyrase inhibiting toxin-antitoxin system
56Dda3937_041723165867..3166103 [-], 237Putative antitoxin of gyrase inhibiting toxin-antitoxin system
57Dda3937_041733166423..3166659 [+], 237Transposase
58Dda3937_041743167510..3167932 [+], 423hypothetical protein
59Dda3937_041753167995..3168390 [+], 396hypothetical protein
60Dda3937_041763168404..3169720 [+], 1317hypothetical protein
61Dda3937_041773169727..3170605 [+], 879putative deoxyribonuclease
62Dda3937_041783170602..3171237 [+], 636hypothetical protein
63Dda3937_041793171273..3174899 [+], 3627hemagglutinin protein
64Dda3937_018793175283..3187930 [+], 12648Predicted cell-wall-anchored protein SasA (LPXTG motif)
65Dda3937_018783188250..3188381 [+], 132hypothetical protein
66Dda3937_018773188368..3188754 [+], 387TriL protein
67Dda3937_018763188751..3189065 [-], 315Putative toxin of gyrase inhibiting toxin-antitoxin system
68Dda3937_018753189068..3189304 [-], 237Putative antitoxin of gyrase inhibiting toxin-antitoxin system
69ardC3189619..3190644 [-], 1026Antirestriction protein
70Dda3937_043513190546..3190758 [+], 213hypothetical protein
71Dda3937_018733191323..3192738 [+], 1416hypothetical protein
72Dda3937_018723192744..3193010 [+], 267ATP-dependent helicase
73Dda3937_018713193712..3195214 [-], 1503hypothetical protein
74Dda3937_018703195352..3195999 [-], 648hypothetical protein
75Dda3937_018693195996..3197108 [-], 1113putative molybdenum cofactor synthesis-step 1 protein isoform 2
76Dda3937_018683197101..3198495 [-], 1395Arylsulfatase regulator (Fe-S oxidoreductase)
77Dda3937_018673198492..3198812 [-], 321hypothetical protein
78Dda3937_018663199257..3199775 [-], 519hypothetical protein
79Dda3937_043523199756..3199980 [-], 225hypothetical protein
80Dda3937_018653200494..3200760 [+], 267ISEch8 OrfA
81Dda3937_018643200811..3201029 [+], 219ISEch8 OrfB
82Dda3937_043533201005..3201229 [+], 225hypothetical protein
83Dda3937_018633201721..3202968 [+], 1248Rhamnosyltransferase I, subunit B
84ggt3203273..3205036 [+], 1764Gamma-glutamyltranspeptidase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins75Fasta
Identified as part of this study from CP002038