ICEberg
I. Information of ICE
ICEberg ID379
Name ICESthJIM8232-1 This is a putative ICE identified in this study by Blast
FamilyICESa2603
OrganismStreptococcus thermophilus JIM 8232
Size (bp)50501
GC content [Genome] (%)36.86[38.92]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFR875178 (complete ICE sequence in this genome)
Replicon[FR875178]
Genome coordinates527211..577719 
Putative oriT region -
Putative relaxase coordinates: 564698..566566; Locus tag: STH8232_0691;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESthJIM8232-1 is not available.



The graph information of ICESthJIM8232-1 components from FR875178
Complete gene list of ICESthJIM8232-1 from FR875178
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1STH8232_0645522708..523466 [+], 759hypothetical protein
2STH8232_0646523618..523752 [+], 135hypothetical protein
3STH8232_0647523733..524086 [+], 354hypothetical protein
4STH8232_0648524326..524571 [+], 246hypothetical protein
5STH8232_0649524757..524990 [+], 234hypothetical protein
6STH8232_0651525094..525393 [+], 300macrolide ABC efflux protein (fragment)
7STH8232_0652525390..525605 [+], 216ABC transporter permease protein
8rpIJ525896..526399 [+], 504ribosomal protein L10
9rpiL526474..526842 [+], 369ribosomal protein L7/L12
10STH8232_0655527041..527214 [+], 174hypothetical protein
11repA527211..528029 [+], 819replication initiator protein A
12STH8232_0657528031..528126 [+], 96hypothetical protein
13STH8232_0658528330..528752 [+], 423Q8E4N0 hypothetical protein gbs1371
14STH8232_0659528380..529534 [+], 1155C-5 cytosine-specific DNA methylase
15STH8232_0660529518..529946 [+], 429putative uncharacterized protein
16STH8232_0661529957..530340 [+], 384arsenate reductase and related proteins,glutaredoxin family (COG1393)
17STH8232_0662530349..530582 [+], 234hypothetical protein
18STH8232_0664530681..531169 [+], 489CAAX amino terminal protease family protein,putative abortive infection protein
19STH8232_0665531210..531734 [+], 525putative uncharacterized protein
20STH8232_0666531734..533551 [+], 1818tn5252 ORF21, frameshift and internal deletion (TraG/TraD family)T4CP 
21STH8232_0667533569..533811 [+], 243hypothetical protein
22STH8232_0668533830..534684 [+], 855tn5252 ORF23-Tn5252 ORF24, frameshifts
23STH8232_0669534746..535099 [+], 354tn5252, Orf25, degenerate
24STH8232_0670535077..537407 [+], 2331tn5252 ORF26 (VirB4, Type IV secretory pathway)PrgJ, T4SS component 
25STH8232_0671537409..540210 [+], 2802tn5252 ORF28 (CHAP domain pfam05257,N-acetylmuramoyl-L-alanine amidase PRK08581)PrgK, T4SS component 
26STH8232_0672540297..541142 [-], 846hypothetical protein
27abiGI541139..541729 [-], 591putative transcriptional regulator
28STH8232_0674542010..546905 [+], 4896surface antigen I/II superfamily proteinPrgB, T4SS component 
29STH8232_0675546906..547097 [+], 192hypothetical protein
30STH8232_0676547123..547632 [+], 510hypothetical protein
31STH8232_0677547682..554506 [+], 6825putative DNA methylase
32STH8232_0678554577..554876 [+], 300hypothetical protein
33ICESde3396_46554890..555180 [+], 291hypothetical protein
34STH8232_0680555276..555914 [+], 639hypothetical proteinPrgL, T4SS component 
35STH8232_0681555954..557030 [+], 1077putative Zinc finger polymerase CHC2 type
36STH8232_0682557084..557311 [+], 228hypothetical protein
37STH8232_0683557308..557697 [+], 390hypothetical protein
38STH8232_0684557747..558037 [+], 291hypothetical protein
39STH8232_0685558107..558583 [+], 477transcriptional regulator (HTH_XRE, cd00093)
40STH8232_0686558583..559353 [+], 771zeta toxin
41STH8232_0687559367..561613 [+], 2247putative ATP-dependent endonuclease of the OLDfamily
42STH8232_0688561617..563632 [+], 2016uvrD, superfamily I DNA and RNA helicases
43STH8232_0689563977..564336 [+], 360tn5252, Orf 10 protein
44STH8232_0690564346..564711 [+], 366tn5252 ORF9, Bacterial mobilisation protein (MobC)
45STH8232_0691564698..566566 [+], 1869tn5252, relaxaseRelaxase, MOBP Family
46STH8232_0692566823..567650 [+], 828putative transcriptional regulator PlcR
47STH8232_0693567804..567941 [+], 138hypothetical protein
48STH8232_0694567941..568495 [+], 555flavoprotein
49STH8232_0696569426..570535 [+], 1110pyridoxal-dependent decarboxylase, Orn/Lys/Arg family
50STH8232_0697570514..571899 [+], 1386hypothetical protein SP0167
51STH8232_0698572908..574089 [+], 1182putative macrolide efflux protein
52orF00044574815..575495 [+], 681insertion sequence IS946 transposase
53STH8232_0701575763..575987 [+], 225phage associated transcriptional regulator
54STH8232_0702576267..576494 [+], 228hypothetical protein
55STH8232_0703576517..577719 [+], 1203integraseIntegrase 
56STH8232_0704577948..579204 [-], 1257transposase, IS204/IS1001/IS1096/IS1165
57STH8232_0705579656..579862 [-], 207transposase
58OB3137580054..580728 [-], 675ABC transporter ATP-binding protein
59STH8232_0707580733..581086 [-], 354ABC-type antimicrobial peptide transport system,permease component
60tnpISSth1,orf2581134..582003 [-], 870transposase
61tnpSth1582018..582704 [-], 687ISSth1, transposase (Orf1), IS3 family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins45Fasta
Identified as part of this study from FR875178